miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 7335 0.68 0.999663
Target:  5'- -----cACACCGuucucggGCGCCcGCugauACGGCa -3'
miRNA:   3'- gaaaauUGUGGU-------UGCGGuUGu---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 25648 0.67 0.999912
Target:  5'- ----aAACGCCuGC-CCAAUuuGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGcGGUUGu-UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 39544 0.66 0.999934
Target:  5'- ----aAACACCGGCaCCuuugacugcACAGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGu--------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 17111 0.66 0.999951
Target:  5'- -gUUUGACACUAuUGCCGcguACAuuGCGGa -3'
miRNA:   3'- gaAAAUUGUGGUuGCGGU---UGU--UGCCg -5'
11182 5' -45.4 NC_002816.1 + 9721 0.66 0.999964
Target:  5'- ----cAGCACCcGCGCCAcauaaAUAuuuUGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGU-----UGUu--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 32894 0.66 0.999974
Target:  5'- ---gUGGCACaUggUGCCGAaguCGGCGGUg -3'
miRNA:   3'- gaaaAUUGUG-GuuGCGGUU---GUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 104039 0.66 0.999964
Target:  5'- aUUUgguACACCAccaaGUCGGguGCGGCg -3'
miRNA:   3'- gAAAau-UGUGGUug--CGGUUguUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 120042 0.66 0.999981
Target:  5'- -----cGCGCCAGuguaGUCAACAGCGaGUa -3'
miRNA:   3'- gaaaauUGUGGUUg---CGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 49156 0.66 0.999981
Target:  5'- ----gAGCGCCAAguugGCCAgguucGCcGCGGCu -3'
miRNA:   3'- gaaaaUUGUGGUUg---CGGU-----UGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 100477 0.67 0.999883
Target:  5'- ----gGugGCCGAgcgaGCCAuCAACGGUc -3'
miRNA:   3'- gaaaaUugUGGUUg---CGGUuGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 73334 0.67 0.999883
Target:  5'- ----cAGCACCAggauggauucgGCGCgaugCAACuACGGCa -3'
miRNA:   3'- gaaaaUUGUGGU-----------UGCG----GUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 55408 0.67 0.999863
Target:  5'- aCUUUgugcACACCAuUGUuuugcuggaaauaauCAACGGCGGCa -3'
miRNA:   3'- -GAAAau--UGUGGUuGCG---------------GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 26894 0.68 0.999671
Target:  5'- ----cGACAauuCCAACGCCGAC--UGGUa -3'
miRNA:   3'- gaaaaUUGU---GGUUGCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 33285 0.68 0.999671
Target:  5'- --aUUAcCACCAACGCCAccACAAUa-- -3'
miRNA:   3'- gaaAAUuGUGGUUGCGGU--UGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 3707 0.68 0.999671
Target:  5'- ----gAACACCAcauCGCCG-CGAgGGUg -3'
miRNA:   3'- gaaaaUUGUGGUu--GCGGUuGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 121986 0.68 0.999671
Target:  5'- ---gUAACGuuGugGCCAGCcuUGGCc -3'
miRNA:   3'- gaaaAUUGUggUugCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 117243 0.68 0.999743
Target:  5'- ------cCACCAGuuUGUaCAACGACGGCa -3'
miRNA:   3'- gaaaauuGUGGUU--GCG-GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 74747 0.68 0.999743
Target:  5'- -----uGCACCAAUaaCCAACAGCaGCa -3'
miRNA:   3'- gaaaauUGUGGUUGc-GGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 17307 0.67 0.999843
Target:  5'- ----gAACugCAACaGCUcauaaacaaugguGGCGGCGGCa -3'
miRNA:   3'- gaaaaUUGugGUUG-CGG-------------UUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 14325 0.67 0.999847
Target:  5'- ---gUAACguaACCGGCGCCGcGCAAguaauCGGCc -3'
miRNA:   3'- gaaaAUUG---UGGUUGCGGU-UGUU-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.