miRNA: 3'- -UACAACGuGCAAGUu-------GUCAUGGAGUg -5'
miRNA: 3'- -UACAACGUGCAAGUUGUCAUGGAGUG- -5'
miRNA: 3'- -UACAACGuGCaaGUUGUCAUG-GAGUG- -5'
miRNA: 3'- uacaACGUGCaa-----GUUGUCAUG-GAGUG- -5'
miRNA: 3'- -UACAACGUGCA--AGUUGUca-UGGAG--UG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11183 | 5' | -48.4 | NC_002816.1 | + | 34516 | 0.72 | 0.892304 |
|
Target: 5'- cGUGUUGC-CGUUCAcauucaccCAGUGCCUUAa -3' miRNA: 3'- -UACAACGuGCAAGUu-------GUCAUGGAGUg -5' |
|||||||
| 11183 | 5' | -48.4 | NC_002816.1 | + | 58269 | 1.09 | 0.009864 |
|
Target: 5'- cAUGUUGCACGUUCAACAGUACCUCACa -3' miRNA: 3'- -UACAACGUGCAAGUUGUCAUGGAGUG- -5' |
|||||||
| 11183 | 5' | -48.4 | NC_002816.1 | + | 99610 | 0.72 | 0.919145 |
|
Target: 5'- uAUGUUGU-CGgcCAACAGUGCaCUCGCc -3' miRNA: 3'- -UACAACGuGCaaGUUGUCAUG-GAGUG- -5' |
|||||||
| 11183 | 5' | -48.4 | NC_002816.1 | + | 109476 | 0.66 | 0.997169 |
|
Target: 5'- ---aUGCGCGguauggcCAACAGUAUgCUCACu -3' miRNA: 3'- uacaACGUGCaa-----GUUGUCAUG-GAGUG- -5' |
|||||||
| 11183 | 5' | -48.4 | NC_002816.1 | + | 114878 | 0.69 | 0.975934 |
|
Target: 5'- aGUGUUGCGCGUcaUCAACGaaaACCUUcaACa -3' miRNA: 3'- -UACAACGUGCA--AGUUGUca-UGGAG--UG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home