miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11184 3' -55 NC_002816.1 + 60233 0.76 0.339691
Target:  5'- -cCGAguUGAGCGACACCaACACACCg-- -3'
miRNA:   3'- uaGCU--ACUCGCUGUGG-UGUGUGGguu -5'
11184 3' -55 NC_002816.1 + 32105 0.67 0.819699
Target:  5'- -cCGA--GGCGuagugccCACCACACACCCGu -3'
miRNA:   3'- uaGCUacUCGCu------GUGGUGUGUGGGUu -5'
11184 3' -55 NC_002816.1 + 11453 0.68 0.782577
Target:  5'- aAUUGGUG-GCGuACACCACGCuuCCCu- -3'
miRNA:   3'- -UAGCUACuCGC-UGUGGUGUGu-GGGuu -5'
11184 3' -55 NC_002816.1 + 88176 0.7 0.680997
Target:  5'- uUCGGUGAGC---GCCACACGCCa-- -3'
miRNA:   3'- uAGCUACUCGcugUGGUGUGUGGguu -5'
11184 3' -55 NC_002816.1 + 47724 0.7 0.64921
Target:  5'- cAUCacuAUGAGCca-GCCGCACACCCAAa -3'
miRNA:   3'- -UAGc--UACUCGcugUGGUGUGUGGGUU- -5'
11184 3' -55 NC_002816.1 + 81522 0.71 0.6056
Target:  5'- -cCGGUGuuuuucaAGCGACccACCGCGCACCCu- -3'
miRNA:   3'- uaGCUAC-------UCGCUG--UGGUGUGUGGGuu -5'
11184 3' -55 NC_002816.1 + 77697 0.73 0.512846
Target:  5'- uUUGAUGucAGCGGCACCACACugUCc- -3'
miRNA:   3'- uAGCUAC--UCGCUGUGGUGUGugGGuu -5'
11184 3' -55 NC_002816.1 + 102321 0.72 0.533276
Target:  5'- gGUUGGUGAGCGAC---GCGCACCUAAa -3'
miRNA:   3'- -UAGCUACUCGCUGuggUGUGUGGGUU- -5'
11184 3' -55 NC_002816.1 + 121399 0.7 0.64921
Target:  5'- gAUCGAUGcuCGACGCCAC-CACCa-- -3'
miRNA:   3'- -UAGCUACucGCUGUGGUGuGUGGguu -5'
11184 3' -55 NC_002816.1 + 62465 0.7 0.64921
Target:  5'- uGUCGAUuacacGGGCGACAUgUugGCACCCAu -3'
miRNA:   3'- -UAGCUA-----CUCGCUGUG-GugUGUGGGUu -5'
11184 3' -55 NC_002816.1 + 6745 0.69 0.711355
Target:  5'- gGUCGAUGA-CGAUcugggcuACCACGCACCUc- -3'
miRNA:   3'- -UAGCUACUcGCUG-------UGGUGUGUGGGuu -5'
11184 3' -55 NC_002816.1 + 3821 0.67 0.810671
Target:  5'- --aGGUGcGCGACACCA-ACACUCAAc -3'
miRNA:   3'- uagCUACuCGCUGUGGUgUGUGGGUU- -5'
11184 3' -55 NC_002816.1 + 103316 0.67 0.832025
Target:  5'- uUCGAcaaauuguggccagGuGCGACACCAC-CACCCu- -3'
miRNA:   3'- uAGCUa-------------CuCGCUGUGGUGuGUGGGuu -5'
11184 3' -55 NC_002816.1 + 79964 0.67 0.837191
Target:  5'- gGUCGGUGGGUaugGACAUggagcgaucgCGCACAUCCAc -3'
miRNA:   3'- -UAGCUACUCG---CUGUG----------GUGUGUGGGUu -5'
11184 3' -55 NC_002816.1 + 11723 0.66 0.853878
Target:  5'- -aUGGUGGGUGAUGCCACcgcggACACCUu- -3'
miRNA:   3'- uaGCUACUCGCUGUGGUG-----UGUGGGuu -5'
11184 3' -55 NC_002816.1 + 80888 1.04 0.005094
Target:  5'- aAUCGAUGAGCGACACCACACACCCAAc -3'
miRNA:   3'- -UAGCUACUCGCUGUGGUGUGUGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.