miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11184 5' -52.8 NC_002816.1 + 63182 0.66 0.947667
Target:  5'- cGggCGGACGAGGUGGauuguGguUCGCg-- -3'
miRNA:   3'- aCa-GCCUGUUUCACCg----CguAGCGaua -5'
11184 5' -52.8 NC_002816.1 + 17707 0.66 0.943025
Target:  5'- aUGUUGGGCAgagcguuaaccaGAGUGGUGaCGUCGg--- -3'
miRNA:   3'- -ACAGCCUGU------------UUCACCGC-GUAGCgaua -5'
11184 5' -52.8 NC_002816.1 + 71021 0.66 0.938123
Target:  5'- cGUgGGGauguGUGGCGUugaGUCGCUGg -3'
miRNA:   3'- aCAgCCUguuuCACCGCG---UAGCGAUa -5'
11184 5' -52.8 NC_002816.1 + 106676 0.67 0.932959
Target:  5'- uUGUCGGAUAuuGGUcuguauaGCGCGUCGCc-- -3'
miRNA:   3'- -ACAGCCUGUu-UCAc------CGCGUAGCGaua -5'
11184 5' -52.8 NC_002816.1 + 110438 0.67 0.929188
Target:  5'- uUGUCGGugAcugugcgccaaucuaGGGUGGCcguguacGUGUCGCUGc -3'
miRNA:   3'- -ACAGCCugU---------------UUCACCG-------CGUAGCGAUa -5'
11184 5' -52.8 NC_002816.1 + 100807 0.68 0.896453
Target:  5'- aGUgGGA-GGAGUGGCGCgaaugucuaauGUUGCUGUg -3'
miRNA:   3'- aCAgCCUgUUUCACCGCG-----------UAGCGAUA- -5'
11184 5' -52.8 NC_002816.1 + 99137 0.68 0.867013
Target:  5'- cGUCGGGCGA--UGGCGCAcuUgGCa-- -3'
miRNA:   3'- aCAGCCUGUUucACCGCGU--AgCGaua -5'
11184 5' -52.8 NC_002816.1 + 87383 0.69 0.859055
Target:  5'- uUGUUGaGCAAGGUGGUGUAUUGUUu- -3'
miRNA:   3'- -ACAGCcUGUUUCACCGCGUAGCGAua -5'
11184 5' -52.8 NC_002816.1 + 77848 0.7 0.797463
Target:  5'- -aUCGGACAGuGUGGUGC--CGCUGa -3'
miRNA:   3'- acAGCCUGUUuCACCGCGuaGCGAUa -5'
11184 5' -52.8 NC_002816.1 + 106805 0.7 0.787929
Target:  5'- aGUUGGACGggagacgcagccGAGUGGCGCGcacCGCa-- -3'
miRNA:   3'- aCAGCCUGU------------UUCACCGCGUa--GCGaua -5'
11184 5' -52.8 NC_002816.1 + 80854 1.06 0.006536
Target:  5'- uUGUCGGACAAAGUGGCGCAUCGCUAUc -3'
miRNA:   3'- -ACAGCCUGUUUCACCGCGUAGCGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.