miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11185 3' -52.9 NC_002816.1 + 36996 0.66 0.964593
Target:  5'- aGugGCCaaACGCCcgGaCgUGGGACACGu -3'
miRNA:   3'- aCugCGG--UGUGGaaCaG-ACCUUGUGC- -5'
11185 3' -52.9 NC_002816.1 + 32276 0.66 0.949079
Target:  5'- aGAUGCCACAUUUUGUaUGGAu--CGu -3'
miRNA:   3'- aCUGCGGUGUGGAACAgACCUuguGC- -5'
11185 3' -52.9 NC_002816.1 + 103307 0.66 0.947313
Target:  5'- uUGugGCCAggugcgacaccacCACCcuccaUUGUCUuaucaaucuaaucaGGAACACGa -3'
miRNA:   3'- -ACugCGGU-------------GUGG-----AACAGA--------------CCUUGUGC- -5'
11185 3' -52.9 NC_002816.1 + 59649 0.67 0.934855
Target:  5'- aGGCGCCACACaCUacuaUGUCUuuuACACu -3'
miRNA:   3'- aCUGCGGUGUG-GA----ACAGAccuUGUGc -5'
11185 3' -52.9 NC_002816.1 + 108183 0.68 0.912323
Target:  5'- gGugGCaCACACCUcGUUgGuGAGCACa -3'
miRNA:   3'- aCugCG-GUGUGGAaCAGaC-CUUGUGc -5'
11185 3' -52.9 NC_002816.1 + 47147 0.68 0.88575
Target:  5'- gGACGCCACaACCUcG-CUGaGAaaACGCGu -3'
miRNA:   3'- aCUGCGGUG-UGGAaCaGAC-CU--UGUGC- -5'
11185 3' -52.9 NC_002816.1 + 14597 0.68 0.906054
Target:  5'- cGACGCCAC-CCUgcacgGUUUGcaAACGCGc -3'
miRNA:   3'- aCUGCGGUGuGGAa----CAGACc-UUGUGC- -5'
11185 3' -52.9 NC_002816.1 + 80651 0.69 0.846363
Target:  5'- cGACGCCACGCgaaucaaccaagaCUUGUUUGuGGGCGgGu -3'
miRNA:   3'- aCUGCGGUGUG-------------GAACAGAC-CUUGUgC- -5'
11185 3' -52.9 NC_002816.1 + 93259 0.73 0.66283
Target:  5'- aGACGCCACaaucACCUUGgUUGGGuuGCGCa -3'
miRNA:   3'- aCUGCGGUG----UGGAACaGACCU--UGUGc -5'
11185 3' -52.9 NC_002816.1 + 83771 1.1 0.003738
Target:  5'- uUGACGCCACACCUUGUCUGGAACACGg -3'
miRNA:   3'- -ACUGCGGUGUGGAACAGACCUUGUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.