miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11186 3' -51.3 NC_002816.1 + 45679 0.66 0.981438
Target:  5'- ----cUGGUGuuuaGUGUGgUGUUGAGCGa -3'
miRNA:   3'- guuaaGCCAC----UACACgACGACUCGCc -5'
11186 3' -51.3 NC_002816.1 + 36434 0.67 0.968105
Target:  5'- ----aCGGUGAcuauUUGCUGAGCGGc -3'
miRNA:   3'- guuaaGCCACUacacGACGACUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 77991 0.69 0.934641
Target:  5'- ----aCGGUGAUGUuuUGUguaGAGCGGc -3'
miRNA:   3'- guuaaGCCACUACAcgACGa--CUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 86536 0.69 0.923708
Target:  5'- ---gUUGGUGAUGUcGUUGgUGAGCa- -3'
miRNA:   3'- guuaAGCCACUACA-CGACgACUCGcc -5'
11186 3' -51.3 NC_002816.1 + 11498 0.69 0.923708
Target:  5'- ----aCGGaGA-GUGCUGCggUGGGCGGa -3'
miRNA:   3'- guuaaGCCaCUaCACGACG--ACUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 36744 0.69 0.90534
Target:  5'- --uUUCGGUGAaagUGUGCggagGUgUGGGUGGa -3'
miRNA:   3'- guuAAGCCACU---ACACGa---CG-ACUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 98061 0.7 0.87801
Target:  5'- gCAAaUCGGUG-UGUGUccaguguuaucaagaGCUGAGCGGu -3'
miRNA:   3'- -GUUaAGCCACuACACGa--------------CGACUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 84217 0.71 0.85366
Target:  5'- ---aUgGGUGAUGUgGUUGUcggUGAGCGGu -3'
miRNA:   3'- guuaAgCCACUACA-CGACG---ACUCGCC- -5'
11186 3' -51.3 NC_002816.1 + 86911 1.12 0.004057
Target:  5'- cCAAUUCGGUGAUGUGCUGCUGAGCGGg -3'
miRNA:   3'- -GUUAAGCCACUACACGACGACUCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.