miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11186 5' -54.2 NC_002816.1 + 86876 1.08 0.004024
Target:  5'- uGUCCACCAACAGACACCUCCAACGCGc -3'
miRNA:   3'- -CAGGUGGUUGUCUGUGGAGGUUGCGC- -5'
11186 5' -54.2 NC_002816.1 + 45892 0.74 0.537942
Target:  5'- -aCCugCAGCGGACACUguaCCGGCGaCGg -3'
miRNA:   3'- caGGugGUUGUCUGUGGa--GGUUGC-GC- -5'
11186 5' -54.2 NC_002816.1 + 99605 0.73 0.589578
Target:  5'- uGUCgGCCAACAGuGCACUcgCCAACGUu -3'
miRNA:   3'- -CAGgUGGUUGUC-UGUGGa-GGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 60827 0.73 0.600031
Target:  5'- uGUCCGCC-AUGGACAgCaaCCAACGCGa -3'
miRNA:   3'- -CAGGUGGuUGUCUGUgGa-GGUUGCGC- -5'
11186 5' -54.2 NC_002816.1 + 15430 0.71 0.683862
Target:  5'- uUCCAucuUCAACAGACGCuCUUCGugGCu -3'
miRNA:   3'- cAGGU---GGUUGUCUGUG-GAGGUugCGc -5'
11186 5' -54.2 NC_002816.1 + 92446 0.7 0.735081
Target:  5'- -cCCACCAGuCAGAUuCCcgCCGACGCc -3'
miRNA:   3'- caGGUGGUU-GUCUGuGGa-GGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 75762 0.7 0.745082
Target:  5'- -cCCACCGAC-GACGCCcaaUCCAccaaAUGCGa -3'
miRNA:   3'- caGGUGGUUGuCUGUGG---AGGU----UGCGC- -5'
11186 5' -54.2 NC_002816.1 + 8658 0.7 0.774419
Target:  5'- -cCCGCCcucuuGCaAGAUACuCUCCAGCGCc -3'
miRNA:   3'- caGGUGGu----UG-UCUGUG-GAGGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 61284 0.69 0.82051
Target:  5'- aUCCuCCGuCGGugGCUcCCAACGCGu -3'
miRNA:   3'- cAGGuGGUuGUCugUGGaGGUUGCGC- -5'
11186 5' -54.2 NC_002816.1 + 46087 0.69 0.802552
Target:  5'- -cCCACUuuGGCGGGCACCguucguuugCuCAGCGCGa -3'
miRNA:   3'- caGGUGG--UUGUCUGUGGa--------G-GUUGCGC- -5'
11186 5' -54.2 NC_002816.1 + 105546 0.69 0.829223
Target:  5'- cGUCCACCGAucacCAGACAUacgCUCCAccacCGCc -3'
miRNA:   3'- -CAGGUGGUU----GUCUGUG---GAGGUu---GCGc -5'
11186 5' -54.2 NC_002816.1 + 11711 0.69 0.802552
Target:  5'- -gCCACC-GCGGACACCUUCAA-GUa -3'
miRNA:   3'- caGGUGGuUGUCUGUGGAGGUUgCGc -5'
11186 5' -54.2 NC_002816.1 + 466 0.68 0.854196
Target:  5'- aUCCGCCAACaAGACcCCUacuACGUGg -3'
miRNA:   3'- cAGGUGGUUG-UCUGuGGAgguUGCGC- -5'
11186 5' -54.2 NC_002816.1 + 74790 0.68 0.854196
Target:  5'- aUCCAguuuacgcCCGACGGACGCg-CCAACGUu -3'
miRNA:   3'- cAGGU--------GGUUGUCUGUGgaGGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 50168 0.68 0.869799
Target:  5'- uGUCCACCAGCAcACACUguuuguguugggUgUAGCGCa -3'
miRNA:   3'- -CAGGUGGUUGUcUGUGG------------AgGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 27164 0.67 0.904782
Target:  5'- aUCCACC-ACAGcCAUCUCCGcaGCa -3'
miRNA:   3'- cAGGUGGuUGUCuGUGGAGGUugCGc -5'
11186 5' -54.2 NC_002816.1 + 42298 0.67 0.877266
Target:  5'- uUCCGCCgAACAaauacGACGCCUCacacaaauCAACGCc -3'
miRNA:   3'- cAGGUGG-UUGU-----CUGUGGAG--------GUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 31367 0.66 0.928365
Target:  5'- --aCGCCAcauACGGAUACCgaaaCAGCGCu -3'
miRNA:   3'- cagGUGGU---UGUCUGUGGag--GUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 30682 0.66 0.925083
Target:  5'- -gCCGCCGGCu-ACACCagauuuucguacucgUCCGGCGCa -3'
miRNA:   3'- caGGUGGUUGucUGUGG---------------AGGUUGCGc -5'
11186 5' -54.2 NC_002816.1 + 67239 0.66 0.922845
Target:  5'- -aCCACCAACGuuguccgcauCACUgaaUCCGGCGCGu -3'
miRNA:   3'- caGGUGGUUGUcu--------GUGG---AGGUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.