miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11187 5' -49.2 NC_002816.1 + 10555 1.12 0.006551
Target:  5'- uUCCUCCAAAAAAUACGACCCACCCACa -3'
miRNA:   3'- -AGGAGGUUUUUUAUGCUGGGUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 79026 0.68 0.981956
Target:  5'- uUCCUCCGcaaccugaucacccaAuuGGUGCGACCCAaaguccugaCCAUc -3'
miRNA:   3'- -AGGAGGU---------------UuuUUAUGCUGGGUg--------GGUG- -5'
11187 5' -49.2 NC_002816.1 + 98754 0.68 0.985153
Target:  5'- gCCUCCcuGAAAUcgcucguuaGCGACCUGUCCGCc -3'
miRNA:   3'- aGGAGGuuUUUUA---------UGCUGGGUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 42298 0.67 0.988519
Target:  5'- uUCCgCCGAAcAAAUACGACgC-CUCACa -3'
miRNA:   3'- -AGGaGGUUU-UUUAUGCUGgGuGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 3956 0.67 0.989963
Target:  5'- gUCCUCCAGAAAucuugGCGugUUGCCa-- -3'
miRNA:   3'- -AGGAGGUUUUUua---UGCugGGUGGgug -5'
11187 5' -49.2 NC_002816.1 + 81527 0.67 0.991261
Target:  5'- gUUUUUCAA-----GCGACCCACCgCGCa -3'
miRNA:   3'- -AGGAGGUUuuuuaUGCUGGGUGG-GUG- -5'
11187 5' -49.2 NC_002816.1 + 104982 0.66 0.994376
Target:  5'- gUCCUCUuucAAAAUGCugUCCACCaCACa -3'
miRNA:   3'- -AGGAGGuu-UUUUAUGcuGGGUGG-GUG- -5'
11187 5' -49.2 NC_002816.1 + 91584 0.66 0.996527
Target:  5'- cUCCUUCAAAcacauGUACGACUucuUACCCu- -3'
miRNA:   3'- -AGGAGGUUUuu---UAUGCUGG---GUGGGug -5'
11187 5' -49.2 NC_002816.1 + 53188 0.66 0.996527
Target:  5'- aUCgucgCCGuaaacguAAAUACGaACCCugCCACg -3'
miRNA:   3'- aGGa---GGUuu-----UUUAUGC-UGGGugGGUG- -5'
11187 5' -49.2 NC_002816.1 + 16575 0.68 0.978757
Target:  5'- uUUCUCCAguaAAAAAU-UGACCCAUUUACa -3'
miRNA:   3'- -AGGAGGU---UUUUUAuGCUGGGUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 105941 0.69 0.976227
Target:  5'- cUgUUCAAGAuGUGCGAUCaCACCUACa -3'
miRNA:   3'- aGgAGGUUUUuUAUGCUGG-GUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 76565 0.69 0.963887
Target:  5'- cCCUCCAAucacAAAU-CGACUCACCgCAa -3'
miRNA:   3'- aGGAGGUUu---UUUAuGCUGGGUGG-GUg -5'
11187 5' -49.2 NC_002816.1 + 29836 0.77 0.648372
Target:  5'- uUCC-CCGGAGAAcUGCGACUCuCCCACa -3'
miRNA:   3'- -AGGaGGUUUUUU-AUGCUGGGuGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 520 0.74 0.804156
Target:  5'- cUCUCCAAAAAGggcuuUGCGuuCCCGCUCACu -3'
miRNA:   3'- aGGAGGUUUUUU-----AUGCu-GGGUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 46310 0.72 0.881041
Target:  5'- cCCaCCAAAAAcccGCGACCCuucACCCACc -3'
miRNA:   3'- aGGaGGUUUUUua-UGCUGGG---UGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 98610 0.71 0.937959
Target:  5'- uUCCUCCu--AAAUAaca-CCACCCACu -3'
miRNA:   3'- -AGGAGGuuuUUUAUgcugGGUGGGUG- -5'
11187 5' -49.2 NC_002816.1 + 7313 0.7 0.952094
Target:  5'- -aCUCCAcAAAGUACGcCgCCACCaCACc -3'
miRNA:   3'- agGAGGUuUUUUAUGCuG-GGUGG-GUG- -5'
11187 5' -49.2 NC_002816.1 + 59797 0.7 0.956279
Target:  5'- gCCUUU-----GUugGACCCGCCCAa -3'
miRNA:   3'- aGGAGGuuuuuUAugCUGGGUGGGUg -5'
11187 5' -49.2 NC_002816.1 + 56486 0.7 0.960209
Target:  5'- cUCCUCCcuGAGcacacACGcCCCACCCGg -3'
miRNA:   3'- -AGGAGGuuUUUua---UGCuGGGUGGGUg -5'
11187 5' -49.2 NC_002816.1 + 97988 0.69 0.963887
Target:  5'- gCCUCCcuGGAGAAgcgugACGACUugaUACCCGCc -3'
miRNA:   3'- aGGAGG--UUUUUUa----UGCUGG---GUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.