Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11187 | 5' | -49.2 | NC_002816.1 | + | 79026 | 0.68 | 0.981956 |
Target: 5'- uUCCUCCGcaaccugaucacccaAuuGGUGCGACCCAaaguccugaCCAUc -3' miRNA: 3'- -AGGAGGU---------------UuuUUAUGCUGGGUg--------GGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 81527 | 0.67 | 0.991261 |
Target: 5'- gUUUUUCAA-----GCGACCCACCgCGCa -3' miRNA: 3'- -AGGAGGUUuuuuaUGCUGGGUGG-GUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 83865 | 0.7 | 0.956279 |
Target: 5'- -gCUCCA-----UACcACCCACCCACc -3' miRNA: 3'- agGAGGUuuuuuAUGcUGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 91584 | 0.66 | 0.996527 |
Target: 5'- cUCCUUCAAAcacauGUACGACUucuUACCCu- -3' miRNA: 3'- -AGGAGGUUUuu---UAUGCUGG---GUGGGug -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 96744 | 0.67 | 0.991261 |
Target: 5'- aCCUCCAuacAAGAGUcUGACaacacguacaCACCCGCc -3' miRNA: 3'- aGGAGGU---UUUUUAuGCUGg---------GUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 97988 | 0.69 | 0.963887 |
Target: 5'- gCCUCCcuGGAGAAgcgugACGACUugaUACCCGCc -3' miRNA: 3'- aGGAGG--UUUUUUa----UGCUGG---GUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 98125 | 0.69 | 0.963887 |
Target: 5'- cUUCUCCAGGGAG-GCGGCCa--CCACa -3' miRNA: 3'- -AGGAGGUUUUUUaUGCUGGgugGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 98610 | 0.71 | 0.937959 |
Target: 5'- uUCCUCCu--AAAUAaca-CCACCCACu -3' miRNA: 3'- -AGGAGGuuuUUUAUgcugGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 98754 | 0.68 | 0.985153 |
Target: 5'- gCCUCCcuGAAAUcgcucguuaGCGACCUGUCCGCc -3' miRNA: 3'- aGGAGGuuUUUUA---------UGCUGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 104982 | 0.66 | 0.994376 |
Target: 5'- gUCCUCUuucAAAAUGCugUCCACCaCACa -3' miRNA: 3'- -AGGAGGuu-UUUUAUGcuGGGUGG-GUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 105941 | 0.69 | 0.976227 |
Target: 5'- cUgUUCAAGAuGUGCGAUCaCACCUACa -3' miRNA: 3'- aGgAGGUUUUuUAUGCUGG-GUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 106656 | 0.67 | 0.989963 |
Target: 5'- cCCcCCAcAAuaugACGAUCCACCCGa -3' miRNA: 3'- aGGaGGUuUUuua-UGCUGGGUGGGUg -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 107961 | 0.72 | 0.888422 |
Target: 5'- uUCgUCCAGGAuuauguAGUugGGCaCACCCACa -3' miRNA: 3'- -AGgAGGUUUU------UUAugCUGgGUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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