miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11188 5' -47.7 NC_002816.1 + 11936 1.12 0.008507
Target:  5'- uUUUCGCUAAAAUCUCGGCGCAAAGCCa -3'
miRNA:   3'- -AAAGCGAUUUUAGAGCCGCGUUUCGG- -5'
11188 5' -47.7 NC_002816.1 + 48587 0.74 0.888665
Target:  5'- -cUCGCcAGAAUCUCGGCaCAAAaCCa -3'
miRNA:   3'- aaAGCGaUUUUAGAGCCGcGUUUcGG- -5'
11188 5' -47.7 NC_002816.1 + 50864 0.73 0.909668
Target:  5'- -cUCGgcAAAAUCUUGGCGCAAAaCCa -3'
miRNA:   3'- aaAGCgaUUUUAGAGCCGCGUUUcGG- -5'
11188 5' -47.7 NC_002816.1 + 48291 0.72 0.933748
Target:  5'- uUUUCGCUAAAAUUUUaGCcGUAAAGUCa -3'
miRNA:   3'- -AAAGCGAUUUUAGAGcCG-CGUUUCGG- -5'
11188 5' -47.7 NC_002816.1 + 34740 0.7 0.974669
Target:  5'- -cUUGUUGAAcgacggcuccGUCUUGGCGUucGGCCu -3'
miRNA:   3'- aaAGCGAUUU----------UAGAGCCGCGuuUCGG- -5'
11188 5' -47.7 NC_002816.1 + 3948 0.7 0.979869
Target:  5'- ---aGCUccuuguccuccaGAAAUCUUGGCGUGuuGCCa -3'
miRNA:   3'- aaagCGA------------UUUUAGAGCCGCGUuuCGG- -5'
11188 5' -47.7 NC_002816.1 + 98704 0.7 0.979869
Target:  5'- -gUCGCguacAGAGUcCUCGGCGCcgguGGCa -3'
miRNA:   3'- aaAGCGa---UUUUA-GAGCCGCGuu--UCGg -5'
11188 5' -47.7 NC_002816.1 + 41426 0.67 0.995711
Target:  5'- -aUCGUU--GAUUUUGGCGgAAAGCg -3'
miRNA:   3'- aaAGCGAuuUUAGAGCCGCgUUUCGg -5'
11188 5' -47.7 NC_002816.1 + 12052 0.67 0.997448
Target:  5'- uUUUCGCUAAAAUUUCuuGaaUAAAGCCa -3'
miRNA:   3'- -AAAGCGAUUUUAGAGc-CgcGUUUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.