miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11189 5' -48.2 NC_002816.1 + 39678 0.66 0.999111
Target:  5'- gGUGCcgguguUGAUGUGGUGACAa-GGGu -3'
miRNA:   3'- gUACGuuu---AUUGCACCGCUGUgcUCC- -5'
11189 5' -48.2 NC_002816.1 + 97873 0.66 0.998908
Target:  5'- gGUGCGuGAUGAUauuaUGGCGGugUACGAGGu -3'
miRNA:   3'- gUACGU-UUAUUGc---ACCGCU--GUGCUCC- -5'
11189 5' -48.2 NC_002816.1 + 107645 0.66 0.998384
Target:  5'- --gGCAAAaguGCGcuguUGGUGGCGCuGAGGa -3'
miRNA:   3'- guaCGUUUau-UGC----ACCGCUGUG-CUCC- -5'
11189 5' -48.2 NC_002816.1 + 18900 0.66 0.999111
Target:  5'- --aGCAAAUGACacaGUGGaUGACACaGuGGa -3'
miRNA:   3'- guaCGUUUAUUG---CACC-GCUGUG-CuCC- -5'
11189 5' -48.2 NC_002816.1 + 60440 0.67 0.996688
Target:  5'- --gGCAcgagGGUAGgGUGGUG-UACGAGGu -3'
miRNA:   3'- guaCGU----UUAUUgCACCGCuGUGCUCC- -5'
11189 5' -48.2 NC_002816.1 + 58984 0.67 0.997062
Target:  5'- aUAUGCGGGUAAacgGUGGCGAuuucgcguuugaucCACGAa- -3'
miRNA:   3'- -GUACGUUUAUUg--CACCGCU--------------GUGCUcc -5'
11189 5' -48.2 NC_002816.1 + 7056 0.67 0.996688
Target:  5'- uGUGCAGA--GCGUGcGCGAguuuCugGAGa -3'
miRNA:   3'- gUACGUUUauUGCAC-CGCU----GugCUCc -5'
11189 5' -48.2 NC_002816.1 + 31920 0.69 0.988961
Target:  5'- --gGUGGAUGugGUGGUgcgGGCACGGGu -3'
miRNA:   3'- guaCGUUUAUugCACCG---CUGUGCUCc -5'
11189 5' -48.2 NC_002816.1 + 119022 0.7 0.974344
Target:  5'- aCGUGCAAuggggGUAugGagGGUGGCAaGAGGa -3'
miRNA:   3'- -GUACGUU-----UAUugCa-CCGCUGUgCUCC- -5'
11189 5' -48.2 NC_002816.1 + 104060 0.71 0.96138
Target:  5'- gGUGCG----GCGUGGCacaaucGACACGAGa -3'
miRNA:   3'- gUACGUuuauUGCACCG------CUGUGCUCc -5'
11189 5' -48.2 NC_002816.1 + 107127 0.72 0.934421
Target:  5'- uUAUGCGAGggagaugguggAGCGauUGGCG-CGCGAGGg -3'
miRNA:   3'- -GUACGUUUa----------UUGC--ACCGCuGUGCUCC- -5'
11189 5' -48.2 NC_002816.1 + 105384 0.74 0.883521
Target:  5'- -uUGCAAGUuuAAUuUGGUGugGCGAGGg -3'
miRNA:   3'- guACGUUUA--UUGcACCGCugUGCUCC- -5'
11189 5' -48.2 NC_002816.1 + 40979 0.74 0.890807
Target:  5'- uUAUGUuAAUaGugGUGGUGACgACGAGGa -3'
miRNA:   3'- -GUACGuUUA-UugCACCGCUG-UGCUCC- -5'
11189 5' -48.2 NC_002816.1 + 19529 1.11 0.011012
Target:  5'- uCAUGCAAAUAACGUGGCGACACGAGGu -3'
miRNA:   3'- -GUACGUUUAUUGCACCGCUGUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.