miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11190 3' -58.4 NC_002816.1 + 6353 0.67 0.666004
Target:  5'- -gACGCCGcCCCAaucucccuguagucCA-CCACACCCUc -3'
miRNA:   3'- aaUGCGGCuGGGU--------------GUaGGUGUGGGGc -5'
11190 3' -58.4 NC_002816.1 + 10930 0.68 0.62816
Target:  5'- aUGCGCUG-CCCACA--CAgGCCCUGg -3'
miRNA:   3'- aAUGCGGCuGGGUGUagGUgUGGGGC- -5'
11190 3' -58.4 NC_002816.1 + 12232 0.66 0.72933
Target:  5'- aUUACGUgcGCCCAUAUCaaaaACACCCUc -3'
miRNA:   3'- -AAUGCGgcUGGGUGUAGg---UGUGGGGc -5'
11190 3' -58.4 NC_002816.1 + 15894 0.66 0.748844
Target:  5'- uUUGCGCCcuACCUaucaACAUaCGCACCCCu -3'
miRNA:   3'- -AAUGCGGc-UGGG----UGUAgGUGUGGGGc -5'
11190 3' -58.4 NC_002816.1 + 16053 0.68 0.638401
Target:  5'- -gGCGCCGAaCCACGccaCCACAUCCa- -3'
miRNA:   3'- aaUGCGGCUgGGUGUa--GGUGUGGGgc -5'
11190 3' -58.4 NC_002816.1 + 17652 0.68 0.65886
Target:  5'- -gGCGCUGACacgugggaCACuggCgCGCACCCCGu -3'
miRNA:   3'- aaUGCGGCUGg-------GUGua-G-GUGUGGGGC- -5'
11190 3' -58.4 NC_002816.1 + 17800 0.68 0.648637
Target:  5'- -cGCGCCaGuguCCCACGUgUcaGCGCCCCa -3'
miRNA:   3'- aaUGCGG-Cu--GGGUGUAgG--UGUGGGGc -5'
11190 3' -58.4 NC_002816.1 + 23430 0.7 0.507538
Target:  5'- aUGCGCCGAUCUACGUCaucauUACgCCGa -3'
miRNA:   3'- aAUGCGGCUGGGUGUAGgu---GUGgGGC- -5'
11190 3' -58.4 NC_002816.1 + 23471 1.05 0.002286
Target:  5'- aUUACGCCGACCCACAUCCACACCCCGc -3'
miRNA:   3'- -AAUGCGGCUGGGUGUAGGUGUGGGGC- -5'
11190 3' -58.4 NC_002816.1 + 29356 0.69 0.56704
Target:  5'- uUUACGCgUGGC-CACGUCCACAUCCa- -3'
miRNA:   3'- -AAUGCG-GCUGgGUGUAGGUGUGGGgc -5'
11190 3' -58.4 NC_002816.1 + 31031 0.69 0.597486
Target:  5'- ---aGCCGACagagaaACAUCCAC-CCCCa -3'
miRNA:   3'- aaugCGGCUGgg----UGUAGGUGuGGGGc -5'
11190 3' -58.4 NC_002816.1 + 32907 0.66 0.758452
Target:  5'- cUGC-CCGACCCACcgCCucaucaacagGCACCgUGg -3'
miRNA:   3'- aAUGcGGCUGGGUGuaGG----------UGUGGgGC- -5'
11190 3' -58.4 NC_002816.1 + 40092 0.66 0.767947
Target:  5'- --cCGCUGAUCCaACGcUCCACACUUCa -3'
miRNA:   3'- aauGCGGCUGGG-UGU-AGGUGUGGGGc -5'
11190 3' -58.4 NC_002816.1 + 77310 0.71 0.460059
Target:  5'- -aGCGuCCG--CCACAUCCACACCCa- -3'
miRNA:   3'- aaUGC-GGCugGGUGUAGGUGUGGGgc -5'
11190 3' -58.4 NC_002816.1 + 91710 0.69 0.587302
Target:  5'- --cCGCCGcaguCCCACAUCUcCACCCa- -3'
miRNA:   3'- aauGCGGCu---GGGUGUAGGuGUGGGgc -5'
11190 3' -58.4 NC_002816.1 + 105734 0.68 0.65886
Target:  5'- -cACgGUCGACCCcCGUCCcguCACCCaCGa -3'
miRNA:   3'- aaUG-CGGCUGGGuGUAGGu--GUGGG-GC- -5'
11190 3' -58.4 NC_002816.1 + 107841 0.68 0.648637
Target:  5'- gUACGCC--CCCACAUacacaaucuugCCGCGCuCCCGc -3'
miRNA:   3'- aAUGCGGcuGGGUGUA-----------GGUGUG-GGGC- -5'
11190 3' -58.4 NC_002816.1 + 109340 0.68 0.617922
Target:  5'- --uCGCCGACUUACcuuUCUACGCCCa- -3'
miRNA:   3'- aauGCGGCUGGGUGu--AGGUGUGGGgc -5'
11190 3' -58.4 NC_002816.1 + 110731 0.67 0.719442
Target:  5'- -gACGCCGucGCCCACcUCCuaaGCUCUGu -3'
miRNA:   3'- aaUGCGGC--UGGGUGuAGGug-UGGGGC- -5'
11190 3' -58.4 NC_002816.1 + 112875 0.69 0.577151
Target:  5'- -aACGCCGACgaCAC--CCuCACCCCGa -3'
miRNA:   3'- aaUGCGGCUGg-GUGuaGGuGUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.