miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11190 5' -54.5 NC_002816.1 + 11457 0.66 0.927493
Target:  5'- cGGUGAGgagggugUGGUGGugGCuCGACCc-- -3'
miRNA:   3'- -CCGCUCaa-----GCCGCCugUG-GUUGGuuu -5'
11190 5' -54.5 NC_002816.1 + 23292 0.66 0.916113
Target:  5'- uGGgGGGaaugUCGGCGGGguCCAGCg--- -3'
miRNA:   3'- -CCgCUCa---AGCCGCCUguGGUUGguuu -5'
11190 5' -54.5 NC_002816.1 + 110821 0.66 0.916113
Target:  5'- aGCGAucgcauGUUCuuGGCGGGCGagucccCCGACCAAu -3'
miRNA:   3'- cCGCU------CAAG--CCGCCUGU------GGUUGGUUu -5'
11190 5' -54.5 NC_002816.1 + 25056 0.66 0.912503
Target:  5'- gGGCGGGUUCGaaGUGGguuucacugguugacACACUguuAACCAGAg -3'
miRNA:   3'- -CCGCUCAAGC--CGCC---------------UGUGG---UUGGUUU- -5'
11190 5' -54.5 NC_002816.1 + 19292 0.66 0.910047
Target:  5'- cGGCGGGUUCauuGGCGGGggacuccuguucCGCCu-CCAu- -3'
miRNA:   3'- -CCGCUCAAG---CCGCCU------------GUGGuuGGUuu -5'
11190 5' -54.5 NC_002816.1 + 78878 0.67 0.860791
Target:  5'- cGGCG-GUaugaggacUCGGuCGGugGCCGACUg-- -3'
miRNA:   3'- -CCGCuCA--------AGCC-GCCugUGGUUGGuuu -5'
11190 5' -54.5 NC_002816.1 + 61038 0.68 0.852839
Target:  5'- cGGCG-GUUCGacaauGUGGGCACCAuaGCuCAAGu -3'
miRNA:   3'- -CCGCuCAAGC-----CGCCUGUGGU--UG-GUUU- -5'
11190 5' -54.5 NC_002816.1 + 17351 0.7 0.753236
Target:  5'- gGGUccgGGGUUgGGCuguGGACACgAACCAGAg -3'
miRNA:   3'- -CCG---CUCAAgCCG---CCUGUGgUUGGUUU- -5'
11190 5' -54.5 NC_002816.1 + 67429 0.7 0.753236
Target:  5'- uGGCG-GUgguagCGGUGGGCACUAGCa--- -3'
miRNA:   3'- -CCGCuCAa----GCCGCCUGUGGUUGguuu -5'
11190 5' -54.5 NC_002816.1 + 16192 0.7 0.727227
Target:  5'- uGGCGuGGUUCGGCGccGACGaaaucgucuccauacUCAACCAAAa -3'
miRNA:   3'- -CCGC-UCAAGCCGC--CUGU---------------GGUUGGUUU- -5'
11190 5' -54.5 NC_002816.1 + 119558 0.7 0.717058
Target:  5'- cGGUGGGguaggCGGCGGgacauuauucgauugGCACgCGACCAAAc -3'
miRNA:   3'- -CCGCUCaa---GCCGCC---------------UGUG-GUUGGUUU- -5'
11190 5' -54.5 NC_002816.1 + 8529 0.71 0.702695
Target:  5'- gGGCGGGguggugUCGGCGGAaaACgAGCCGu- -3'
miRNA:   3'- -CCGCUCa-----AGCCGCCUg-UGgUUGGUuu -5'
11190 5' -54.5 NC_002816.1 + 23506 1.09 0.003084
Target:  5'- cGGCGAGUUCGGCGGACACCAACCAAAg -3'
miRNA:   3'- -CCGCUCAAGCCGCCUGUGGUUGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.