miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11191 3' -41.4 NC_002816.1 + 26099 1.08 0.066001
Target:  5'- cACCUUUGAACAAAUGCACACUAUAAUg -3'
miRNA:   3'- -UGGAAACUUGUUUACGUGUGAUAUUA- -5'
11191 3' -41.4 NC_002816.1 + 84699 0.72 0.999716
Target:  5'- cACCUauuuuagcacGAACAAuAUGCACACUGUGGg -3'
miRNA:   3'- -UGGAaa--------CUUGUU-UACGUGUGAUAUUa -5'
11191 3' -41.4 NC_002816.1 + 54806 0.69 0.999997
Target:  5'- -aCUUUGAGCGGuUGCGCGCcauguugGUGAUg -3'
miRNA:   3'- ugGAAACUUGUUuACGUGUGa------UAUUA- -5'
11191 3' -41.4 NC_002816.1 + 32881 0.68 0.999999
Target:  5'- aGCCgaUGAGCGAGUgGCACAUgGUGc- -3'
miRNA:   3'- -UGGaaACUUGUUUA-CGUGUGaUAUua -5'
11191 3' -41.4 NC_002816.1 + 37911 0.68 0.999999
Target:  5'- cGCCgagaaUGGGCGucaaaAAUGCACACUAUc-- -3'
miRNA:   3'- -UGGaa---ACUUGU-----UUACGUGUGAUAuua -5'
11191 3' -41.4 NC_002816.1 + 23865 0.68 1
Target:  5'- aACUg--GGACaAAGUGCGCACUAa--- -3'
miRNA:   3'- -UGGaaaCUUG-UUUACGUGUGAUauua -5'
11191 3' -41.4 NC_002816.1 + 99342 0.67 1
Target:  5'- uGCUUgaaacaGAGCAAAUGCACAuacuacaacuCUAUGAUu -3'
miRNA:   3'- -UGGAaa----CUUGUUUACGUGU----------GAUAUUA- -5'
11191 3' -41.4 NC_002816.1 + 17573 0.66 1
Target:  5'- gGCCagUUGggUAAGUGC-CGuCUGUAGg -3'
miRNA:   3'- -UGGa-AACuuGUUUACGuGU-GAUAUUa -5'
11191 3' -41.4 NC_002816.1 + 93694 0.66 1
Target:  5'- cGCCUUgcgUGAACAAGUGCGagacCUAc--- -3'
miRNA:   3'- -UGGAA---ACUUGUUUACGUgu--GAUauua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.