miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11191 5' -47.8 NC_002816.1 + 26134 1.13 0.008188
Target:  5'- cGCAGUGUAGCGUGUUCAUCAAUCCGAg -3'
miRNA:   3'- -CGUCACAUCGCACAAGUAGUUAGGCU- -5'
11191 5' -47.8 NC_002816.1 + 80742 0.75 0.837337
Target:  5'- gGguGUGUGGUGUcGcUCAUCGAUUCGGa -3'
miRNA:   3'- -CguCACAUCGCA-CaAGUAGUUAGGCU- -5'
11191 5' -47.8 NC_002816.1 + 108646 0.7 0.984789
Target:  5'- -aAGUGUAGCGUG---AUCGGUCCc- -3'
miRNA:   3'- cgUCACAUCGCACaagUAGUUAGGcu -5'
11191 5' -47.8 NC_002816.1 + 111563 0.68 0.994243
Target:  5'- cGCGGUGcAGC-UGUUgAUgGAUCUGAa -3'
miRNA:   3'- -CGUCACaUCGcACAAgUAgUUAGGCU- -5'
11191 5' -47.8 NC_002816.1 + 121253 0.67 0.997488
Target:  5'- uGguG-GUGGCGUcGagCAUCGAUCCa- -3'
miRNA:   3'- -CguCaCAUCGCA-CaaGUAGUUAGGcu -5'
11191 5' -47.8 NC_002816.1 + 8681 0.67 0.998261
Target:  5'- uCAGUGUGGCGaucgaUGUgag-CGAUCUGAu -3'
miRNA:   3'- cGUCACAUCGC-----ACAaguaGUUAGGCU- -5'
11191 5' -47.8 NC_002816.1 + 113688 0.67 0.998261
Target:  5'- -aAGUGggAGUGUGUUUGUCAAgCUGGa -3'
miRNA:   3'- cgUCACa-UCGCACAAGUAGUUaGGCU- -5'
11191 5' -47.8 NC_002816.1 + 58658 0.66 0.999374
Target:  5'- --cGU-UGGUGUGUUCAUCAggCCGc -3'
miRNA:   3'- cguCAcAUCGCACAAGUAGUuaGGCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.