Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11192 | 5' | -50.6 | NC_002816.1 | + | 29372 | 1.14 | 0.004666 |
Target: 5'- uCCACAUCCAAUCGGUGGUCGACUAGCc -3' miRNA: 3'- -GGUGUAGGUUAGCCACCAGCUGAUCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 51033 | 0.7 | 0.920397 |
Target: 5'- aCCAUuUCUGGaUGGUGGUCGGCUacAGUc -3' miRNA: 3'- -GGUGuAGGUUaGCCACCAGCUGA--UCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 87211 | 0.7 | 0.925527 |
Target: 5'- aCCACAuggagauugcggcUUCGGUCaGUGGUUG-CUGGCu -3' miRNA: 3'- -GGUGU-------------AGGUUAGcCACCAGCuGAUCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 78864 | 0.67 | 0.981984 |
Target: 5'- -----cUCGGUCGGUGGcCGACU-GCg -3' miRNA: 3'- gguguaGGUUAGCCACCaGCUGAuCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 5224 | 0.67 | 0.983402 |
Target: 5'- aCGCA-CCAAUgaacauagugagggUGGUGG-CGACUAGg -3' miRNA: 3'- gGUGUaGGUUA--------------GCCACCaGCUGAUCg -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 90154 | 0.67 | 0.983983 |
Target: 5'- -aACuaaCAAUUGGcUGGUUGGCUGGUa -3' miRNA: 3'- ggUGuagGUUAGCC-ACCAGCUGAUCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 60413 | 0.66 | 0.991571 |
Target: 5'- aUCACAUCgCGcAUCaccuGUGGUCGAC-AGUa -3' miRNA: 3'- -GGUGUAG-GU-UAGc---CACCAGCUGaUCG- -5' |
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11192 | 5' | -50.6 | NC_002816.1 | + | 490 | 0.66 | 0.992671 |
Target: 5'- aCCACAggUCCAugaucucuugGUCGGUGGU-GAUgGGg -3' miRNA: 3'- -GGUGU--AGGU----------UAGCCACCAgCUGaUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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