miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11192 5' -50.6 NC_002816.1 + 490 0.66 0.992671
Target:  5'- aCCACAggUCCAugaucucuugGUCGGUGGU-GAUgGGg -3'
miRNA:   3'- -GGUGU--AGGU----------UAGCCACCAgCUGaUCg -5'
11192 5' -50.6 NC_002816.1 + 5224 0.67 0.983402
Target:  5'- aCGCA-CCAAUgaacauagugagggUGGUGG-CGACUAGg -3'
miRNA:   3'- gGUGUaGGUUA--------------GCCACCaGCUGAUCg -5'
11192 5' -50.6 NC_002816.1 + 29372 1.14 0.004666
Target:  5'- uCCACAUCCAAUCGGUGGUCGACUAGCc -3'
miRNA:   3'- -GGUGUAGGUUAGCCACCAGCUGAUCG- -5'
11192 5' -50.6 NC_002816.1 + 51033 0.7 0.920397
Target:  5'- aCCAUuUCUGGaUGGUGGUCGGCUacAGUc -3'
miRNA:   3'- -GGUGuAGGUUaGCCACCAGCUGA--UCG- -5'
11192 5' -50.6 NC_002816.1 + 60413 0.66 0.991571
Target:  5'- aUCACAUCgCGcAUCaccuGUGGUCGAC-AGUa -3'
miRNA:   3'- -GGUGUAG-GU-UAGc---CACCAGCUGaUCG- -5'
11192 5' -50.6 NC_002816.1 + 78864 0.67 0.981984
Target:  5'- -----cUCGGUCGGUGGcCGACU-GCg -3'
miRNA:   3'- gguguaGGUUAGCCACCaGCUGAuCG- -5'
11192 5' -50.6 NC_002816.1 + 87211 0.7 0.925527
Target:  5'- aCCACAuggagauugcggcUUCGGUCaGUGGUUG-CUGGCu -3'
miRNA:   3'- -GGUGU-------------AGGUUAGcCACCAGCuGAUCG- -5'
11192 5' -50.6 NC_002816.1 + 90154 0.67 0.983983
Target:  5'- -aACuaaCAAUUGGcUGGUUGGCUGGUa -3'
miRNA:   3'- ggUGuagGUUAGCC-ACCAGCUGAUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.