miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11193 3' -58.7 NC_002816.1 + 31594 1.06 0.001697
Target:  5'- aUAGGCACCCGGUAGCACACCACACCGu -3'
miRNA:   3'- -AUCCGUGGGCCAUCGUGUGGUGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 11572 0.71 0.460176
Target:  5'- aAGGUGuCCgCGGUGGCAuCACC-CACCa -3'
miRNA:   3'- aUCCGU-GG-GCCAUCGU-GUGGuGUGGc -5'
11193 3' -58.7 NC_002816.1 + 106819 0.68 0.618626
Target:  5'- --cGCAgCCGaGUGGCgcGCACCGCACUa -3'
miRNA:   3'- aucCGUgGGC-CAUCG--UGUGGUGUGGc -5'
11193 3' -58.7 NC_002816.1 + 122458 0.67 0.649448
Target:  5'- --uGCACUCGGgucucgACACCACACCGu -3'
miRNA:   3'- aucCGUGGGCCaucg--UGUGGUGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 109310 0.67 0.659706
Target:  5'- gUGGGUGCCUGaGUAgugagcauacuGUugGCCAUACCGc -3'
miRNA:   3'- -AUCCGUGGGC-CAU-----------CGugUGGUGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 110372 0.67 0.666873
Target:  5'- cGGGUGCCCuGGUAGUacuuuuguuuuucaACGaguCCGCACCa -3'
miRNA:   3'- aUCCGUGGG-CCAUCG--------------UGU---GGUGUGGc -5'
11193 3' -58.7 NC_002816.1 + 12531 0.66 0.730387
Target:  5'- gUAGuuACaCCGGUAcaucauGUACACCAUGCCGu -3'
miRNA:   3'- -AUCcgUG-GGCCAU------CGUGUGGUGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 17295 0.66 0.749949
Target:  5'- aUAGGgGaUUGGUGGCGCugCACGCgGu -3'
miRNA:   3'- -AUCCgUgGGCCAUCGUGugGUGUGgC- -5'
11193 3' -58.7 NC_002816.1 + 46325 0.66 0.749949
Target:  5'- gUGGGCACCaguaGGUAGCGCAagAUAaagCGg -3'
miRNA:   3'- -AUCCGUGGg---CCAUCGUGUggUGUg--GC- -5'
11193 3' -58.7 NC_002816.1 + 84266 0.68 0.587895
Target:  5'- aGGGCACUCGGUGuguGUACgAUC-CACCGu -3'
miRNA:   3'- aUCCGUGGGCCAU---CGUG-UGGuGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 86360 0.68 0.587895
Target:  5'- -cGuGCGCCCcGUucAGCuuCACCACACCGc -3'
miRNA:   3'- auC-CGUGGGcCA--UCGu-GUGGUGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 81676 0.69 0.527478
Target:  5'- aGGGUGCgCGGUGGguCGCUugaaaaACACCGg -3'
miRNA:   3'- aUCCGUGgGCCAUCguGUGG------UGUGGC- -5'
11193 3' -58.7 NC_002816.1 + 3867 0.73 0.333331
Target:  5'- -cGGUugUCGGUGGCACACCcucGCGgCGa -3'
miRNA:   3'- auCCGugGGCCAUCGUGUGG---UGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.