Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11194 | 3' | -56.6 | NC_002816.1 | + | 34051 | 0.66 | 0.836685 |
Target: 5'- uUGGCGUacaccaccgacAGCgAGUcgaGCACACUGUCGa- -3' miRNA: 3'- uGCCGCA-----------UCG-UCA---CGUGUGGCAGCau -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 26006 | 0.66 | 0.819539 |
Target: 5'- gGCGGCGUccAGCucacuaUGCACACUGUUcaaGUAc -3' miRNA: 3'- -UGCCGCA--UCGuc----ACGUGUGGCAG---CAU- -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 121160 | 0.67 | 0.792517 |
Target: 5'- gACGGCGgggugcccauGCuGUGCAUACCGaUgGUGg -3' miRNA: 3'- -UGCCGCau--------CGuCACGUGUGGC-AgCAU- -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 34169 | 0.68 | 0.724663 |
Target: 5'- gACGGUGU-GCAcUGCuACGCCGUCa-- -3' miRNA: 3'- -UGCCGCAuCGUcACG-UGUGGCAGcau -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 90312 | 0.7 | 0.621494 |
Target: 5'- cCGGCGUcguAGCAGUGCGuuuuaaacaGCCGUUGa- -3' miRNA: 3'- uGCCGCA---UCGUCACGUg--------UGGCAGCau -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 106935 | 0.74 | 0.405997 |
Target: 5'- cGCGGUGaUGGCGGUGUACAUgGUCa-- -3' miRNA: 3'- -UGCCGC-AUCGUCACGUGUGgCAGcau -5' |
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11194 | 3' | -56.6 | NC_002816.1 | + | 34023 | 1.06 | 0.002752 |
Target: 5'- gACGGCGUAGCAGUGCACACCGUCGUAu -3' miRNA: 3'- -UGCCGCAUCGUCACGUGUGGCAGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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