miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11196 3' -49 NC_002816.1 + 7459 0.66 0.997603
Target:  5'- uGGUGGCGGcGUAcuuuguGGAGU-GgGGUGUGu -3'
miRNA:   3'- gCCAUCGCC-CAU------UUUUAgCgUCACAC- -5'
11196 3' -49 NC_002816.1 + 33089 0.66 0.997141
Target:  5'- aGGUGGUGGaGUAGGAGUaggcgaaaGUGGUgGUGg -3'
miRNA:   3'- gCCAUCGCC-CAUUUUUAg-------CGUCA-CAC- -5'
11196 3' -49 NC_002816.1 + 94620 0.66 0.995996
Target:  5'- gGGUGGC-GGUGAgcGAAUUGCAGaGUu -3'
miRNA:   3'- gCCAUCGcCCAUU--UUUAGCGUCaCAc -5'
11196 3' -49 NC_002816.1 + 33426 0.66 0.995296
Target:  5'- uGGUGGCGuuGGUGGuAAUUGUGGUGc- -3'
miRNA:   3'- gCCAUCGC--CCAUUuUUAGCGUCACac -5'
11196 3' -49 NC_002816.1 + 37335 0.67 0.990163
Target:  5'- -aGUGGUGGGUGu-GGUCGguGUGc- -3'
miRNA:   3'- gcCAUCGCCCAUuuUUAGCguCACac -5'
11196 3' -49 NC_002816.1 + 94300 0.69 0.976625
Target:  5'- gCGGUGGCGGGcgAAAGAcacaaGCAGUa-- -3'
miRNA:   3'- -GCCAUCGCCCa-UUUUUag---CGUCAcac -5'
11196 3' -49 NC_002816.1 + 84774 0.7 0.960798
Target:  5'- uGGUGGaCGGGgauAGcAUCGUGGUGUa -3'
miRNA:   3'- gCCAUC-GCCCau-UUuUAGCGUCACAc -5'
11196 3' -49 NC_002816.1 + 60616 0.7 0.960798
Target:  5'- --aUAGUGGGUAGGAGggaugugCGCAGUGa- -3'
miRNA:   3'- gccAUCGCCCAUUUUUa------GCGUCACac -5'
11196 3' -49 NC_002816.1 + 23476 0.7 0.960798
Target:  5'- gGuGUAGCGGGUGAuugggagcgcGAUUGUAGuUGUGg -3'
miRNA:   3'- gC-CAUCGCCCAUUu---------UUAGCGUC-ACAC- -5'
11196 3' -49 NC_002816.1 + 39786 0.71 0.948368
Target:  5'- aGGUGGCGGGUAGAcagcauagCGaugaGGUGUu -3'
miRNA:   3'- gCCAUCGCCCAUUUuua-----GCg---UCACAc -5'
11196 3' -49 NC_002816.1 + 109254 0.71 0.938771
Target:  5'- cCGGUAGCGGGUAcugaacAGAcUCGguGacguugGUGa -3'
miRNA:   3'- -GCCAUCGCCCAU------UUUuAGCguCa-----CAC- -5'
11196 3' -49 NC_002816.1 + 46468 0.74 0.833226
Target:  5'- gGGUcGGUGGGUGAAgGGUCGCGGguuuuugGUGg -3'
miRNA:   3'- gCCA-UCGCCCAUUU-UUAGCGUCa------CAC- -5'
11196 3' -49 NC_002816.1 + 43830 0.75 0.77675
Target:  5'- gGaGUGGCGGGUAGAAGUgGgCAG-GUGg -3'
miRNA:   3'- gC-CAUCGCCCAUUUUUAgC-GUCaCAC- -5'
11196 3' -49 NC_002816.1 + 105506 0.8 0.5529
Target:  5'- aGGUGGCGGGUGAuacuGAAUCGUGGagaauUGUGu -3'
miRNA:   3'- gCCAUCGCCCAUU----UUUAGCGUC-----ACAC- -5'
11196 3' -49 NC_002816.1 + 56458 1.1 0.00942
Target:  5'- gCGGUAGCGGGUAAAAAUCGCAGUGUGa -3'
miRNA:   3'- -GCCAUCGCCCAUUUUUAGCGUCACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.