Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11197 | 3' | -51.9 | NC_002816.1 | + | 7561 | 0.66 | 0.959123 |
Target: 5'- uUGAGGuuguGGUGGCGGacaCGGaCGGCu--- -3' miRNA: 3'- -ACUUUu---UCACCGCCg--GCC-GCUGuaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 27659 | 0.66 | 0.962842 |
Target: 5'- gUGAuaauAGAAGUGGUGGCCaG-GGCAg-- -3' miRNA: 3'- -ACU----UUUUCACCGCCGGcCgCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 30827 | 0.68 | 0.920104 |
Target: 5'- cGAAAAucUGGUGuaGCCGGCGGCGc-- -3' miRNA: 3'- aCUUUUucACCGC--CGGCCGCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 37206 | 0.67 | 0.952653 |
Target: 5'- gGAAGAGgguguguuguuugguGUGGUGGaCgGGCGACAc-- -3' miRNA: 3'- aCUUUUU---------------CACCGCC-GgCCGCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 59585 | 0.67 | 0.936713 |
Target: 5'- aUGAAu-GGUGGUaGuuGGCGACAc-- -3' miRNA: 3'- -ACUUuuUCACCGcCggCCGCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 66181 | 0.66 | 0.972573 |
Target: 5'- -uGAGGAGUGGCuuuGUCGGCGAgCAg-- -3' miRNA: 3'- acUUUUUCACCGc--CGGCCGCU-GUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 66786 | 0.68 | 0.914035 |
Target: 5'- aGGAGAcuGGUGGUGGCggaGGCG-CGUUu -3' miRNA: 3'- aCUUUU--UCACCGCCGg--CCGCuGUAAu -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 67437 | 0.69 | 0.864307 |
Target: 5'- aGGGAGGGUGGCGGUgguagCGGUgGGCAc-- -3' miRNA: 3'- aCUUUUUCACCGCCG-----GCCG-CUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 67698 | 0.68 | 0.925907 |
Target: 5'- cGAGAAAGaGGUGgaGCCGGCGAa---- -3' miRNA: 3'- aCUUUUUCaCCGC--CGGCCGCUguaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 68011 | 1.08 | 0.0059 |
Target: 5'- uUGAAAAAGUGGCGGCCGGCGACAUUAg -3' miRNA: 3'- -ACUUUUUCACCGCCGGCCGCUGUAAU- -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 78333 | 0.66 | 0.965301 |
Target: 5'- -uGGAAAGUGGUcgcgugguuguuauGGUgGGCGACAa-- -3' miRNA: 3'- acUUUUUCACCG--------------CCGgCCGCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 91936 | 0.7 | 0.839381 |
Target: 5'- aUGAAgcugGAGGUGGUGuaCGGUGACAc-- -3' miRNA: 3'- -ACUU----UUUCACCGCcgGCCGCUGUaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 100457 | 0.67 | 0.955155 |
Target: 5'- cGGGAGAcggacguugguGUGGUGGCCGaGCGAg---- -3' miRNA: 3'- aCUUUUU-----------CACCGCCGGC-CGCUguaau -5' |
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11197 | 3' | -51.9 | NC_002816.1 | + | 121105 | 0.66 | 0.972573 |
Target: 5'- gUGAAcggguGUGGCGGCUgGGUGugGg-- -3' miRNA: 3'- -ACUUuuu--CACCGCCGG-CCGCugUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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