miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 72257 0.68 0.883367
Target:  5'- uGUAcagCGCCAUCGACAAGgauCUCACCCu -3'
miRNA:   3'- gCGUa--GUGGUGGUUGUUU---GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 31337 0.68 0.876023
Target:  5'- uGC-UCACCGCCAACcugucaCCAUCCu -3'
miRNA:   3'- gCGuAGUGGUGGUUGuuug--GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 24900 0.68 0.876023
Target:  5'- uGUGUCAaccagugaaacCCACUu-CGAACCCGCCCu -3'
miRNA:   3'- gCGUAGU-----------GGUGGuuGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 122940 0.69 0.844373
Target:  5'- -uCAUCGCCGCCGucaACAAACaCugCCAa -3'
miRNA:   3'- gcGUAGUGGUGGU---UGUUUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 36923 0.69 0.827278
Target:  5'- uCGuCGUCAUCACCc---AAUCCACCCAu -3'
miRNA:   3'- -GC-GUAGUGGUGGuuguUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 67232 0.7 0.809421
Target:  5'- aCGCAgCACCACCAACGuugUCCGCaUCAc -3'
miRNA:   3'- -GCGUaGUGGUGGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 7468 0.7 0.800229
Target:  5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3'
miRNA:   3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 76540 0.7 0.781365
Target:  5'- uGCcuUCGCCACgGAuCAucGCCCACCCu -3'
miRNA:   3'- gCGu-AGUGGUGgUU-GUu-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 116047 0.66 0.937786
Target:  5'- -cCGUCACCAUCAacuguuuuauugcGCAguuaGACCCACUCu -3'
miRNA:   3'- gcGUAGUGGUGGU-------------UGU----UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 36858 0.66 0.9332
Target:  5'- aGCaAUCA-CACgCAACccuCCCACCCAa -3'
miRNA:   3'- gCG-UAGUgGUG-GUUGuuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 49518 0.66 0.9332
Target:  5'- aGCGUgcuagagucCACCAUUAACAAcauGCUCACUCAa -3'
miRNA:   3'- gCGUA---------GUGGUGGUUGUU---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 59402 0.66 0.9332
Target:  5'- uGCGUCGCC-CUgaaaAACAugauuGCCCACUCu -3'
miRNA:   3'- gCGUAGUGGuGG----UUGUu----UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 14141 0.67 0.927861
Target:  5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3'
miRNA:   3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 95015 0.66 0.938283
Target:  5'- uGCGUUuuCCGCCAGUAGacucuuguuguGCUCACCCAa -3'
miRNA:   3'- gCGUAGu-GGUGGUUGUU-----------UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 27556 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 27508 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 53051 0.66 0.947686
Target:  5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3'
miRNA:   3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 117754 0.66 0.947686
Target:  5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3'
miRNA:   3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32816 0.66 0.947686
Target:  5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3'
miRNA:   3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 64569 0.8 0.302128
Target:  5'- aGCcguUCcguCCGCCAACGAGCUCACCCAg -3'
miRNA:   3'- gCGu--AGu--GGUGGUUGUUUGGGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.