miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 64569 0.8 0.302128
Target:  5'- aGCcguUCcguCCGCCAACGAGCUCACCCAg -3'
miRNA:   3'- gCGu--AGu--GGUGGUUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 8681 0.67 0.910305
Target:  5'- gGC-UCGuuuuCCGCCGACAccacCCCGCCCu -3'
miRNA:   3'- gCGuAGU----GGUGGUUGUuu--GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 12637 0.69 0.835925
Target:  5'- aGCAcaAUCGCCAuuuguucgaucGCGAGCCCGCCUc -3'
miRNA:   3'- gCGUagUGGUGGU-----------UGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 40349 0.69 0.835925
Target:  5'- gGCGUguCCAaCGACAAACaauCCACCCGg -3'
miRNA:   3'- gCGUAguGGUgGUUGUUUG---GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 8624 0.74 0.584872
Target:  5'- uGCAUCAguCCACCGGCAcACCCAUUa- -3'
miRNA:   3'- gCGUAGU--GGUGGUUGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 110778 0.71 0.718566
Target:  5'- uGCAUCGCaugagccgccuccuCACCAACAAccauCCCACCa- -3'
miRNA:   3'- gCGUAGUG--------------GUGGUUGUUu---GGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 60883 0.74 0.57437
Target:  5'- aCGCGcgCACCuCCAACAAcACCUGCCCu -3'
miRNA:   3'- -GCGUa-GUGGuGGUUGUU-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 458 0.67 0.927861
Target:  5'- aCGaCGUgAuCCGCCAACaAGACCCcuacuacguggGCCCAa -3'
miRNA:   3'- -GC-GUAgU-GGUGGUUG-UUUGGG-----------UGGGU- -5'
11197 5' -53.3 NC_002816.1 + 113425 0.73 0.605977
Target:  5'- gGCAUCGuccuCCGCC-ACGAACCUGCUCAa -3'
miRNA:   3'- gCGUAGU----GGUGGuUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 112860 0.71 0.752017
Target:  5'- uGCGgagaCACCACCAACGccGACgaCACCCu -3'
miRNA:   3'- gCGUa---GUGGUGGUUGU--UUGg-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 85572 0.67 0.924534
Target:  5'- uGUAUC-UCGCCAACAAuuuuaacuuugaauUCCACCCGg -3'
miRNA:   3'- gCGUAGuGGUGGUUGUUu-------------GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 113593 0.67 0.903943
Target:  5'- cCGCucCACCACCuGACc-ACCCACCUu -3'
miRNA:   3'- -GCGuaGUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 12314 0.68 0.897331
Target:  5'- cCGuCAUCAucuCCACCAcCAAuugcuCCUGCCCAa -3'
miRNA:   3'- -GC-GUAGU---GGUGGUuGUUu----GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 121406 0.68 0.890471
Target:  5'- -cCAUCACaggguguacguuCACCAACAguAGCaCCACCCGu -3'
miRNA:   3'- gcGUAGUG------------GUGGUUGU--UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 37657 0.68 0.890471
Target:  5'- uGUGUCACCACCGGCAGAUaguaagugCCAUUg- -3'
miRNA:   3'- gCGUAGUGGUGGUUGUUUG--------GGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 17460 0.68 0.890471
Target:  5'- gGUGaucUCACCACCAACAucGACacucaguuggCCGCCCu -3'
miRNA:   3'- gCGU---AGUGGUGGUUGU--UUG----------GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 7468 0.7 0.800229
Target:  5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3'
miRNA:   3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 76540 0.7 0.781365
Target:  5'- uGCcuUCGCCACgGAuCAucGCCCACCCu -3'
miRNA:   3'- gCGu-AGUGGUGgUU-GUu-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 37797 0.7 0.771713
Target:  5'- uGCAU-GCC-CCAACAc-CCCACCCGc -3'
miRNA:   3'- gCGUAgUGGuGGUUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 117 0.66 0.95609
Target:  5'- cCGCAUcCGCgaaGCCGaguACGAGCCCAUCa- -3'
miRNA:   3'- -GCGUA-GUGg--UGGU---UGUUUGGGUGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.