miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11198 5' -52.7 NC_002816.1 + 7322 0.72 0.707814
Target:  5'- --aGUACGCc--GCCAC-CACACCGUu -3'
miRNA:   3'- cuaCAUGCGaaaCGGUGcGUGUGGCA- -5'
11198 5' -52.7 NC_002816.1 + 22165 0.72 0.707814
Target:  5'- --cGUACGCccgGUCACGUACGCCa- -3'
miRNA:   3'- cuaCAUGCGaaaCGGUGCGUGUGGca -5'
11198 5' -52.7 NC_002816.1 + 29503 0.67 0.927345
Target:  5'- gGAUGUggACGUg--GCCACGCGuaaaguggucguCGCCGa -3'
miRNA:   3'- -CUACA--UGCGaaaCGGUGCGU------------GUGGCa -5'
11198 5' -52.7 NC_002816.1 + 34186 0.68 0.894312
Target:  5'- uGGUGUACGCcaaauacgacggugUgcacUGCUACGCcguCACCGUg -3'
miRNA:   3'- -CUACAUGCG--------------Aa---ACGGUGCGu--GUGGCA- -5'
11198 5' -52.7 NC_002816.1 + 39622 0.68 0.889412
Target:  5'- uGUGUcaaaguUGCUgUGCCA-GCGCACCGUg -3'
miRNA:   3'- cUACAu-----GCGAaACGGUgCGUGUGGCA- -5'
11198 5' -52.7 NC_002816.1 + 77651 1.07 0.005471
Target:  5'- cGAUGUACGCUUUGCCACGCACACCGUc -3'
miRNA:   3'- -CUACAUGCGAAACGGUGCGUGUGGCA- -5'
11198 5' -52.7 NC_002816.1 + 77798 0.73 0.665515
Target:  5'- cGGUGUGCGUg--GCaaaGCGUACAUCGUg -3'
miRNA:   3'- -CUACAUGCGaaaCGg--UGCGUGUGGCA- -5'
11198 5' -52.7 NC_002816.1 + 100618 0.7 0.797851
Target:  5'- uGAUGgcuCGCUcgGCCAC-CACACCa- -3'
miRNA:   3'- -CUACau-GCGAaaCGGUGcGUGUGGca -5'
11198 5' -52.7 NC_002816.1 + 107097 0.68 0.896374
Target:  5'- cAUGU-CGCUaaacUUGaCCAUGUACACCGc -3'
miRNA:   3'- cUACAuGCGA----AAC-GGUGCGUGUGGCa -5'
11198 5' -52.7 NC_002816.1 + 117908 0.72 0.718239
Target:  5'- --cGUACGCUUcGUCGCGCGCAuguUCGUc -3'
miRNA:   3'- cuaCAUGCGAAaCGGUGCGUGU---GGCA- -5'
11198 5' -52.7 NC_002816.1 + 120571 0.71 0.778727
Target:  5'- gGGUGUGCagucuGCUUUgGCCAUGUccaGCACCGg -3'
miRNA:   3'- -CUACAUG-----CGAAA-CGGUGCG---UGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.