miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11199 3' -54.4 NC_002816.1 + 81858 1.08 0.003394
Target:  5'- gGCGCGCCACGUCCAACCCCUUGAAAUa -3'
miRNA:   3'- -CGCGCGGUGCAGGUUGGGGAACUUUA- -5'
11199 3' -54.4 NC_002816.1 + 80903 0.68 0.811305
Target:  5'- uGgGCGCCACGUCCGAaUCgaUGAGc- -3'
miRNA:   3'- -CgCGCGGUGCAGGUUgGGgaACUUua -5'
11199 3' -54.4 NC_002816.1 + 5392 0.68 0.820242
Target:  5'- aUGUGCC-CG-CCGACCUUUUGAGAg -3'
miRNA:   3'- cGCGCGGuGCaGGUUGGGGAACUUUa -5'
11199 3' -54.4 NC_002816.1 + 74449 0.68 0.828998
Target:  5'- uGUGCGCUGCGUUC-ACCCCgcucagUGGc-- -3'
miRNA:   3'- -CGCGCGGUGCAGGuUGGGGa-----ACUuua -5'
11199 3' -54.4 NC_002816.1 + 36637 0.67 0.869765
Target:  5'- cCGCaaguugGUCGCGUCCAGCUCCauuUUGAGGg -3'
miRNA:   3'- cGCG------CGGUGCAGGUUGGGG---AACUUUa -5'
11199 3' -54.4 NC_002816.1 + 90270 0.67 0.891562
Target:  5'- uGCGUGUCAuCGUCCAGCUgg-UGAAGa -3'
miRNA:   3'- -CGCGCGGU-GCAGGUUGGggaACUUUa -5'
11199 3' -54.4 NC_002816.1 + 13464 0.66 0.904892
Target:  5'- cCGCGCCAgUGUCCGAgCCUauaccUGAGAc -3'
miRNA:   3'- cGCGCGGU-GCAGGUUgGGGa----ACUUUa -5'
11199 3' -54.4 NC_002816.1 + 17802 0.66 0.911185
Target:  5'- uGCGCGCCAgUGUCCcacgugucagcGCCCCacUGAGc- -3'
miRNA:   3'- -CGCGCGGU-GCAGGu----------UGGGGa-ACUUua -5'
11199 3' -54.4 NC_002816.1 + 106960 0.66 0.919573
Target:  5'- uGCGCGCCAcucggcugcgucuccCGUCCAACUgUUgcaacacacucUGAAAg -3'
miRNA:   3'- -CGCGCGGU---------------GCAGGUUGGgGA-----------ACUUUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.