miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
112 3' -55.9 AC_000006.1 + 30661 0.66 0.533042
Target:  5'- gAGGU-CGCGG-AGUCCGCAAagggUCuuGa -3'
miRNA:   3'- gUCCAuGCGCCuUCAGGUGUU----GGggC- -5'
112 3' -55.9 AC_000006.1 + 24538 1.09 0.000504
Target:  5'- gCAGGUACGCGGAAGUCCACAACCCCGg -3'
miRNA:   3'- -GUCCAUGCGCCUUCAGGUGUUGGGGC- -5'
112 3' -55.9 AC_000006.1 + 24439 0.74 0.174631
Target:  5'- aAGGUcCGCaGGAGUCCACcGCUCCGc -3'
miRNA:   3'- gUCCAuGCGcCUUCAGGUGuUGGGGC- -5'
112 3' -55.9 AC_000006.1 + 23878 0.67 0.511429
Target:  5'- gAGGcGCgGCGGGAcuauGUCCGCGACUgCGu -3'
miRNA:   3'- gUCCaUG-CGCCUU----CAGGUGUUGGgGC- -5'
112 3' -55.9 AC_000006.1 + 17315 0.69 0.40981
Target:  5'- -uGGUuCGCGau-GUCCACcACCCCGu -3'
miRNA:   3'- guCCAuGCGCcuuCAGGUGuUGGGGC- -5'
112 3' -55.9 AC_000006.1 + 15589 0.69 0.391026
Target:  5'- uGGGUGCGCgacuccgucacGGgcGUgCGCGugCCCGu -3'
miRNA:   3'- gUCCAUGCG-----------CCuuCAgGUGUugGGGC- -5'
112 3' -55.9 AC_000006.1 + 8817 0.66 0.559392
Target:  5'- gCAGGUggucaugcgcGCGCGcGAcgccgacggggacguGGUCUACAGCCgCGu -3'
miRNA:   3'- -GUCCA----------UGCGC-CU---------------UCAGGUGUUGGgGC- -5'
112 3' -55.9 AC_000006.1 + 1968 0.69 0.381848
Target:  5'- aCAGGUGCaugGCuGcGAAGUCCAgaaugUAGCCCCu -3'
miRNA:   3'- -GUCCAUG---CG-C-CUUCAGGU-----GUUGGGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.