miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
112 5' -60.8 AC_000006.1 + 13807 0.66 0.318759
Target:  5'- gAGCGGucGCGGUgGGGCggugaUCUGaaGACCa -3'
miRNA:   3'- -UCGCCu-CGCCA-CCUGa----GGACgcCUGG- -5'
112 5' -60.8 AC_000006.1 + 17257 0.66 0.318759
Target:  5'- -aCGGGGUGGUGGACaUC-GCGaACCa -3'
miRNA:   3'- ucGCCUCGCCACCUGaGGaCGCcUGG- -5'
112 5' -60.8 AC_000006.1 + 14920 0.66 0.311068
Target:  5'- cGGUGGuGaUGGUGGGCgcggGCGGACg -3'
miRNA:   3'- -UCGCCuC-GCCACCUGaggaCGCCUGg -5'
112 5' -60.8 AC_000006.1 + 5750 0.67 0.26118
Target:  5'- cGGUGGAaaaGGUGGACccCCUGgUGGACa -3'
miRNA:   3'- -UCGCCUcg-CCACCUGa-GGAC-GCCUGg -5'
112 5' -60.8 AC_000006.1 + 16435 0.67 0.26118
Target:  5'- aAGCGGuAGCGGUGGAgg-CUG-GGAgCCa -3'
miRNA:   3'- -UCGCC-UCGCCACCUgagGACgCCU-GG- -5'
112 5' -60.8 AC_000006.1 + 5107 0.68 0.257222
Target:  5'- cGCGuGAG-GGUGGuCUCCgucacggugaagggGUGGGCCc -3'
miRNA:   3'- uCGC-CUCgCCACCuGAGGa-------------CGCCUGG- -5'
112 5' -60.8 AC_000006.1 + 8330 0.68 0.25461
Target:  5'- cGGCGGcAGCGGcGG-UUCCggccccGCGGGCa -3'
miRNA:   3'- -UCGCC-UCGCCaCCuGAGGa-----CGCCUGg -5'
112 5' -60.8 AC_000006.1 + 13381 0.68 0.238162
Target:  5'- gGGCgGGAGCGGUGGggucaacccgauaucGCgcaUCCUGCaGcCCa -3'
miRNA:   3'- -UCG-CCUCGCCACC---------------UG---AGGACGcCuGG- -5'
112 5' -60.8 AC_000006.1 + 11923 0.69 0.218005
Target:  5'- -cUGGAgGCGGUGGuccCUUCU-CGGACCa -3'
miRNA:   3'- ucGCCU-CGCCACCu--GAGGAcGCCUGG- -5'
112 5' -60.8 AC_000006.1 + 25835 0.69 0.212361
Target:  5'- gGGCGGAGCGGgcaccgGGAagcgCC-GCcGGCCa -3'
miRNA:   3'- -UCGCCUCGCCa-----CCUga--GGaCGcCUGG- -5'
112 5' -60.8 AC_000006.1 + 16609 0.69 0.206842
Target:  5'- uGCGGcGGCGGcguuugcuggcUGGGCgCCUGCGG-CUg -3'
miRNA:   3'- uCGCC-UCGCC-----------ACCUGaGGACGCCuGG- -5'
112 5' -60.8 AC_000006.1 + 22622 0.7 0.162557
Target:  5'- aGGUGGcGGCGGcgagGGGCUCCUcucgugcuccgGCGGAUa -3'
miRNA:   3'- -UCGCC-UCGCCa---CCUGAGGA-----------CGCCUGg -5'
112 5' -60.8 AC_000006.1 + 24501 1.11 0.000127
Target:  5'- cAGCGGAGCGGUGGACUCCUGCGGACCu -3'
miRNA:   3'- -UCGCCUCGCCACCUGAGGACGCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.