miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11200 3' -48.2 NC_002816.1 + 55236 0.66 0.998856
Target:  5'- aGGCGCaucCGCUc-GUUgcuccaccacaaACUGGUGAACGu -3'
miRNA:   3'- aCUGCG---GUGAaaCAA------------UGACCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 22806 0.66 0.998856
Target:  5'- aUGACGCgACgacugGUcaUugUGGUGcACGa -3'
miRNA:   3'- -ACUGCGgUGaaa--CA--AugACCACuUGC- -5'
11200 3' -48.2 NC_002816.1 + 50329 0.66 0.998784
Target:  5'- -uGCGCUACacccaacacaaacagUGUgUGCUGGUGGACa -3'
miRNA:   3'- acUGCGGUGaa-------------ACA-AUGACCACUUGc -5'
11200 3' -48.2 NC_002816.1 + 8758 0.66 0.997958
Target:  5'- cUGAaucaCGCggUGUUGCUGGUGGgauACGg -3'
miRNA:   3'- -ACUgcg-GUGaaACAAUGACCACU---UGC- -5'
11200 3' -48.2 NC_002816.1 + 59649 0.67 0.997721
Target:  5'- aGGCGCCACacacuacuaugucuuUUacacUGUUugUGGUGAcACu -3'
miRNA:   3'- aCUGCGGUG---------------AA----ACAAugACCACU-UGc -5'
11200 3' -48.2 NC_002816.1 + 8640 0.67 0.99755
Target:  5'- cGAaaauaaGCUGCgcgagcUGUUGgUGGUGAACGg -3'
miRNA:   3'- aCUg-----CGGUGaa----ACAAUgACCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 88244 0.67 0.99597
Target:  5'- gUGucCGCCACaaaauugcgaaucaUGUUGCUGGUGAAg- -3'
miRNA:   3'- -ACu-GCGGUGaa------------ACAAUGACCACUUgc -5'
11200 3' -48.2 NC_002816.1 + 49325 0.67 0.994952
Target:  5'- cGACGCagggcggguaucagCACUUUGUUGagUUGaGUGAGCa -3'
miRNA:   3'- aCUGCG--------------GUGAAACAAU--GAC-CACUUGc -5'
11200 3' -48.2 NC_002816.1 + 68833 0.67 0.994952
Target:  5'- aGACGCCAUUcUGUUcaaguacucgauaaACUGGaaGAACa -3'
miRNA:   3'- aCUGCGGUGAaACAA--------------UGACCa-CUUGc -5'
11200 3' -48.2 NC_002816.1 + 71894 0.68 0.994709
Target:  5'- aGGCGCCGCUaaacgauuacacggUGaaaaugUGCggGGUGGACGa -3'
miRNA:   3'- aCUGCGGUGAa-------------ACa-----AUGa-CCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 30491 0.68 0.99437
Target:  5'- gUGACGCCAgUagGgguUUGGUGGugGu -3'
miRNA:   3'- -ACUGCGGUgAaaCaauGACCACUugC- -5'
11200 3' -48.2 NC_002816.1 + 84940 0.68 0.99437
Target:  5'- -aGCGCCgACUauuUUGUUG-UGGUGAACu -3'
miRNA:   3'- acUGCGG-UGA---AACAAUgACCACUUGc -5'
11200 3' -48.2 NC_002816.1 + 106433 0.68 0.99437
Target:  5'- cGuACGCCAUcUUGU---UGGUGAAUGg -3'
miRNA:   3'- aC-UGCGGUGaAACAaugACCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 58082 0.68 0.991232
Target:  5'- gGGCaCCGCUUUGUaaauuaaagUAgUUGGUGGGCGa -3'
miRNA:   3'- aCUGcGGUGAAACA---------AU-GACCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 38534 0.7 0.97861
Target:  5'- gGugGUgAUUUUGUUgcACUGGUGucGCGg -3'
miRNA:   3'- aCugCGgUGAAACAA--UGACCACu-UGC- -5'
11200 3' -48.2 NC_002816.1 + 45494 0.71 0.963579
Target:  5'- uUGugGCCAcCUUUGaggACgagaaggcGGUGAACGg -3'
miRNA:   3'- -ACugCGGU-GAAACaa-UGa-------CCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 78328 0.74 0.872084
Target:  5'- aGugGUCGCguggUUGUUA-UGGUGGGCGa -3'
miRNA:   3'- aCugCGGUGa---AACAAUgACCACUUGC- -5'
11200 3' -48.2 NC_002816.1 + 83584 1.1 0.011793
Target:  5'- uUGACGCCACUUUGUUACUGGUGAACGu -3'
miRNA:   3'- -ACUGCGGUGAAACAAUGACCACUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.