miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11201 5' -47.2 NC_002816.1 + 14684 0.66 0.999505
Target:  5'- ------gGCgGGUGUUUGG-UUGCGUa -3'
miRNA:   3'- cauuacaCG-CCACAAACCaAACGCAg -5'
11201 5' -47.2 NC_002816.1 + 1837 0.67 0.998555
Target:  5'- cUGGUGgGCGGUGggagUGGUg-GCGUa -3'
miRNA:   3'- cAUUACaCGCCACaa--ACCAaaCGCAg -5'
11201 5' -47.2 NC_002816.1 + 64929 0.67 0.998555
Target:  5'- -cGGUGaGUGGUGggUGGUggucaGUGUCg -3'
miRNA:   3'- caUUACaCGCCACaaACCAaa---CGCAG- -5'
11201 5' -47.2 NC_002816.1 + 60896 0.67 0.998243
Target:  5'- -gAGUGUGgGGUGgugGGUgaUGCGcCg -3'
miRNA:   3'- caUUACACgCCACaaaCCAa-ACGCaG- -5'
11201 5' -47.2 NC_002816.1 + 7616 0.68 0.994953
Target:  5'- aGUAGUGUgGCGGUGa--GGUUgUGCGa- -3'
miRNA:   3'- -CAUUACA-CGCCACaaaCCAA-ACGCag -5'
11201 5' -47.2 NC_002816.1 + 47928 0.73 0.916113
Target:  5'- -gGAUGUGgGGUGaUUGGg--GUGUCg -3'
miRNA:   3'- caUUACACgCCACaAACCaaaCGCAG- -5'
11201 5' -47.2 NC_002816.1 + 84169 1.12 0.010508
Target:  5'- uGUAAUGUGCGGUGUUUGGUUUGCGUCg -3'
miRNA:   3'- -CAUUACACGCCACAAACCAAACGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.