miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11202 3' -50.5 NC_002816.1 + 93033 1.09 0.006844
Target:  5'- aCGCCACAAUCAUGUCGCGCUCAUUGUg -3'
miRNA:   3'- -GCGGUGUUAGUACAGCGCGAGUAACA- -5'
11202 3' -50.5 NC_002816.1 + 12016 0.73 0.807758
Target:  5'- aGCCACcagAGUCGUG-CGCGUUCAUuuggUGUa -3'
miRNA:   3'- gCGGUG---UUAGUACaGCGCGAGUA----ACA- -5'
11202 3' -50.5 NC_002816.1 + 44806 0.71 0.890749
Target:  5'- aGCCACAuUCAuuUGUUugGCGCUC-UUGUa -3'
miRNA:   3'- gCGGUGUuAGU--ACAG--CGCGAGuAACA- -5'
11202 3' -50.5 NC_002816.1 + 68235 0.7 0.917181
Target:  5'- -aUCACGAUCcagGUCGCGCUCGagGUc -3'
miRNA:   3'- gcGGUGUUAGua-CAGCGCGAGUaaCA- -5'
11202 3' -50.5 NC_002816.1 + 120838 0.68 0.957292
Target:  5'- uCGCuCACcaauuuuuucaAGUCAUcaaCGCGCUCAUUGUa -3'
miRNA:   3'- -GCG-GUG-----------UUAGUAca-GCGCGAGUAACA- -5'
11202 3' -50.5 NC_002816.1 + 93261 0.67 0.974111
Target:  5'- aCGCCACAAUCAccuugguuggGUUGCGCaCAUc-- -3'
miRNA:   3'- -GCGGUGUUAGUa---------CAGCGCGaGUAaca -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.