Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11215 | 3' | -51.2 | NC_003038.1 | + | 12260 | 0.66 | 0.998962 |
Target: 5'- aUUAGGAGGUCaUUUugGAgGagguuuauaUAGUCCa -3' miRNA: 3'- gGAUCCUCUAG-AGGugCUgC---------AUCAGG- -5' |
|||||||
11215 | 3' | -51.2 | NC_003038.1 | + | 43136 | 0.67 | 0.994556 |
Target: 5'- gCUUAGGAGAUCUCCuACGuuuCGgAGa-- -3' miRNA: 3'- -GGAUCCUCUAGAGG-UGCu--GCaUCagg -5' |
|||||||
11215 | 3' | -51.2 | NC_003038.1 | + | 96962 | 0.7 | 0.968126 |
Target: 5'- gUCUAGGAGAUCuaucuUCUACGGC-UAuUCCa -3' miRNA: 3'- -GGAUCCUCUAG-----AGGUGCUGcAUcAGG- -5' |
|||||||
11215 | 3' | -51.2 | NC_003038.1 | + | 43367 | 0.76 | 0.772565 |
Target: 5'- aCgUAGGAGAucuccuaagcgacgaUCUCCGCGACGUAGn-- -3' miRNA: 3'- -GgAUCCUCU---------------AGAGGUGCUGCAUCagg -5' |
|||||||
11215 | 3' | -51.2 | NC_003038.1 | + | 43328 | 1.14 | 0.0069 |
Target: 5'- uCCUAGGAGAUCUCCACGACGUAGUCCu -3' miRNA: 3'- -GGAUCCUCUAGAGGUGCUGCAUCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home