miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11226 5' -45.8 NC_003038.1 + 165067 0.66 0.999996
Target:  5'- cCCCUCCACCUg-UUGGUga-AGAa-- -3'
miRNA:   3'- -GGGGGGUGGAaaAACUAaagUCUauu -5'
11226 5' -45.8 NC_003038.1 + 185224 0.67 0.999984
Target:  5'- aCCCCCCugCUUUUUGc-----GGUAAc -3'
miRNA:   3'- -GGGGGGugGAAAAACuaaaguCUAUU- -5'
11226 5' -45.8 NC_003038.1 + 109521 0.67 0.999978
Target:  5'- gCCCCCCACCg----GAaaUUUCcaacagaagAGAUGAa -3'
miRNA:   3'- -GGGGGGUGGaaaaaCU--AAAG---------UCUAUU- -5'
11226 5' -45.8 NC_003038.1 + 185019 0.71 0.998488
Target:  5'- aCCCCCCugCUUUUUaauugguuggGAUUUCAa---- -3'
miRNA:   3'- -GGGGGGugGAAAAA----------CUAAAGUcuauu -5'
11226 5' -45.8 NC_003038.1 + 121741 0.74 0.988011
Target:  5'- aUCCCCCACCUccacUUUUGAg---AGAUGAa -3'
miRNA:   3'- -GGGGGGUGGA----AAAACUaaagUCUAUU- -5'
11226 5' -45.8 NC_003038.1 + 134597 0.76 0.966333
Target:  5'- gCCCCCCACCUUUUUGGga-CAa---- -3'
miRNA:   3'- -GGGGGGUGGAAAAACUaaaGUcuauu -5'
11226 5' -45.8 NC_003038.1 + 134391 1.1 0.033285
Target:  5'- gCCCCCCACCUUUUUGAUUUCAGAUAAa -3'
miRNA:   3'- -GGGGGGUGGAAAAACUAAAGUCUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.