miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11227 3' -47.8 NC_003038.1 + 125227 0.66 0.999968
Target:  5'- cAGGUCua-UCUGAGGgagcgguuguguugGGAUUAUUUCCa -3'
miRNA:   3'- -UCUAGuagAGGCUCU--------------UCUAGUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 12265 0.66 0.999948
Target:  5'- gAGGUCAUUUUgGAGGAGGUUuauAUagUCCa -3'
miRNA:   3'- -UCUAGUAGAGgCUCUUCUAG---UAg-AGG- -5'
11227 3' -47.8 NC_003038.1 + 41276 0.66 0.999931
Target:  5'- uGAUaCAUUUCCaacGAAGAuuUCAUUUCCa -3'
miRNA:   3'- uCUA-GUAGAGGcu-CUUCU--AGUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 39522 0.66 0.999931
Target:  5'- -cGUCGUCUCgGGGcucaGUCGUUUCCa -3'
miRNA:   3'- ucUAGUAGAGgCUCuuc-UAGUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 43038 0.67 0.999753
Target:  5'- ---aCGUCUCCuuGggGAUCuucuaguagAUCUCCu -3'
miRNA:   3'- ucuaGUAGAGGcuCuuCUAG---------UAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 167497 0.68 0.999252
Target:  5'- gAGAUgAUCUUCucGGAGAUgAUCUUCu -3'
miRNA:   3'- -UCUAgUAGAGGcuCUUCUAgUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 108053 0.72 0.984619
Target:  5'- aAGAagccCAUCUCCuAGAAGAagucCAUCUCCu -3'
miRNA:   3'- -UCUa---GUAGAGGcUCUUCUa---GUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 96281 0.79 0.820279
Target:  5'- aAGGUCGUCUCCcccacaugGGGGAGAcgAUCUCCa -3'
miRNA:   3'- -UCUAGUAGAGG--------CUCUUCUagUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 184787 0.79 0.802239
Target:  5'- ----gAUCUCCGGGAAGAUCGUCUa- -3'
miRNA:   3'- ucuagUAGAGGCUCUUCUAGUAGAgg -5'
11227 3' -47.8 NC_003038.1 + 167332 0.99 0.106522
Target:  5'- aAGGUCAUCUCCuAGAAGGUCAUCUCCu -3'
miRNA:   3'- -UCUAGUAGAGGcUCUUCUAGUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 167302 1 0.090475
Target:  5'- aAGAUCAUCUCCuAGAAGGUCAUCUCCu -3'
miRNA:   3'- -UCUAGUAGAGGcUCUUCUAGUAGAGG- -5'
11227 3' -47.8 NC_003038.1 + 167260 1.15 0.012664
Target:  5'- aAGAUCAUCUCCGAGAAGAUCAUCUCCg -3'
miRNA:   3'- -UCUAGUAGAGGCUCUUCUAGUAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.