Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1123 | 3' | -59.2 | NC_000942.1 | + | 16493 | 0.66 | 0.345684 |
Target: 5'- aGG-GguGGU--GCAGuuuGCAGCGGCCa -3' miRNA: 3'- gCCgCguCCGuuUGUCc--CGUCGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 2982 | 0.66 | 0.345684 |
Target: 5'- gCGGUgucGCAGGCGgaucuucgugcAACAGccgagaaGUAGCGGCCc -3' miRNA: 3'- -GCCG---CGUCCGU-----------UUGUCc------CGUCGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 29919 | 0.66 | 0.337229 |
Target: 5'- uGGCGguGuGCccggGAACAuuGGCAGuCGGCCc -3' miRNA: 3'- gCCGCguC-CG----UUUGUc-CCGUC-GUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 23251 | 0.67 | 0.297232 |
Target: 5'- uGGCuGUcugagucugagAGGgAAGCAGGGuCAGCAcuGCCc -3' miRNA: 3'- gCCG-CG-----------UCCgUUUGUCCC-GUCGU--CGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 23458 | 0.67 | 0.297232 |
Target: 5'- uGGUGguGGCAGucGCauucgAGGGCGGgGGgCu -3' miRNA: 3'- gCCGCguCCGUU--UG-----UCCCGUCgUCgG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 9517 | 0.67 | 0.289689 |
Target: 5'- uGGCGCGuGGCu---GGGGCccGCGGCg -3' miRNA: 3'- gCCGCGU-CCGuuugUCCCGu-CGUCGg -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 6425 | 0.67 | 0.27291 |
Target: 5'- aCGGcCGCauagGGGCAAACgccuuuuuccaGGGGCaaagaauaggccucGGCAGCUu -3' miRNA: 3'- -GCC-GCG----UCCGUUUG-----------UCCCG--------------UCGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 12682 | 0.67 | 0.267961 |
Target: 5'- aCGGUGguGGCAAAau-GGCuGUGGUCg -3' miRNA: 3'- -GCCGCguCCGUUUgucCCGuCGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 26894 | 0.68 | 0.241062 |
Target: 5'- gGGCGguGGUucuACGGGGggaucgggAGCAGCg -3' miRNA: 3'- gCCGCguCCGuu-UGUCCCg-------UCGUCGg -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 15872 | 0.7 | 0.159658 |
Target: 5'- gGGCuuucaaCAGGCAuucACGGGGCAGUAGaCa -3' miRNA: 3'- gCCGc-----GUCCGUu--UGUCCCGUCGUCgG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 10180 | 0.7 | 0.158315 |
Target: 5'- --aCGUGGGCAugacccuuacuaagAGCAGGGCcuGCGGCCa -3' miRNA: 3'- gccGCGUCCGU--------------UUGUCCCGu-CGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 30725 | 0.71 | 0.146682 |
Target: 5'- gGGCGUaccgccaaaGGGUuguuuuGAACcGGGCAgGCAGCCa -3' miRNA: 3'- gCCGCG---------UCCG------UUUGuCCCGU-CGUCGG- -5' |
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1123 | 3' | -59.2 | NC_000942.1 | + | 25164 | 1.12 | 0.00009 |
Target: 5'- cCGGCGCAGGCAAACAGGGCAGCAGCCa -3' miRNA: 3'- -GCCGCGUCCGUUUGUCCCGUCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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