miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1123 3' -59.2 NC_000942.1 + 16493 0.66 0.345684
Target:  5'- aGG-GguGGU--GCAGuuuGCAGCGGCCa -3'
miRNA:   3'- gCCgCguCCGuuUGUCc--CGUCGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 2982 0.66 0.345684
Target:  5'- gCGGUgucGCAGGCGgaucuucgugcAACAGccgagaaGUAGCGGCCc -3'
miRNA:   3'- -GCCG---CGUCCGU-----------UUGUCc------CGUCGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 29919 0.66 0.337229
Target:  5'- uGGCGguGuGCccggGAACAuuGGCAGuCGGCCc -3'
miRNA:   3'- gCCGCguC-CG----UUUGUc-CCGUC-GUCGG- -5'
1123 3' -59.2 NC_000942.1 + 23251 0.67 0.297232
Target:  5'- uGGCuGUcugagucugagAGGgAAGCAGGGuCAGCAcuGCCc -3'
miRNA:   3'- gCCG-CG-----------UCCgUUUGUCCC-GUCGU--CGG- -5'
1123 3' -59.2 NC_000942.1 + 23458 0.67 0.297232
Target:  5'- uGGUGguGGCAGucGCauucgAGGGCGGgGGgCu -3'
miRNA:   3'- gCCGCguCCGUU--UG-----UCCCGUCgUCgG- -5'
1123 3' -59.2 NC_000942.1 + 9517 0.67 0.289689
Target:  5'- uGGCGCGuGGCu---GGGGCccGCGGCg -3'
miRNA:   3'- gCCGCGU-CCGuuugUCCCGu-CGUCGg -5'
1123 3' -59.2 NC_000942.1 + 6425 0.67 0.27291
Target:  5'- aCGGcCGCauagGGGCAAACgccuuuuuccaGGGGCaaagaauaggccucGGCAGCUu -3'
miRNA:   3'- -GCC-GCG----UCCGUUUG-----------UCCCG--------------UCGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 12682 0.67 0.267961
Target:  5'- aCGGUGguGGCAAAau-GGCuGUGGUCg -3'
miRNA:   3'- -GCCGCguCCGUUUgucCCGuCGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 26894 0.68 0.241062
Target:  5'- gGGCGguGGUucuACGGGGggaucgggAGCAGCg -3'
miRNA:   3'- gCCGCguCCGuu-UGUCCCg-------UCGUCGg -5'
1123 3' -59.2 NC_000942.1 + 15872 0.7 0.159658
Target:  5'- gGGCuuucaaCAGGCAuucACGGGGCAGUAGaCa -3'
miRNA:   3'- gCCGc-----GUCCGUu--UGUCCCGUCGUCgG- -5'
1123 3' -59.2 NC_000942.1 + 10180 0.7 0.158315
Target:  5'- --aCGUGGGCAugacccuuacuaagAGCAGGGCcuGCGGCCa -3'
miRNA:   3'- gccGCGUCCGU--------------UUGUCCCGu-CGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 30725 0.71 0.146682
Target:  5'- gGGCGUaccgccaaaGGGUuguuuuGAACcGGGCAgGCAGCCa -3'
miRNA:   3'- gCCGCG---------UCCG------UUUGuCCCGU-CGUCGG- -5'
1123 3' -59.2 NC_000942.1 + 25164 1.12 0.00009
Target:  5'- cCGGCGCAGGCAAACAGGGCAGCAGCCa -3'
miRNA:   3'- -GCCGCGUCCGUUUGUCCCGUCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.