miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11265 5' -55.9 NC_003059.1 + 2611 0.66 0.178935
Target:  5'- gCCUAgcggagucugacugGGGGGACcAGGCucucuccaACuGGGCCg -3'
miRNA:   3'- gGGGUa-------------UCCCCUGuUCCG--------UGuUCCGG- -5'
11265 5' -55.9 NC_003059.1 + 622 0.66 0.188043
Target:  5'- gUCCAUucGGGAagcgguguGGC-CAAGGCCa -3'
miRNA:   3'- gGGGUAucCCCUguu-----CCGuGUUCCGG- -5'
11265 5' -55.9 NC_003059.1 + 512 0.67 0.166008
Target:  5'- cCCCCAguucccaGACAAcgguGGCACAagAGGCCa -3'
miRNA:   3'- -GGGGUauccc--CUGUU----CCGUGU--UCCGG- -5'
11265 5' -55.9 NC_003059.1 + 2913 0.67 0.155882
Target:  5'- uUCCCAUcAGGGGAacuGGGCAguCAguuAGGUa -3'
miRNA:   3'- -GGGGUA-UCCCCUgu-UCCGU--GU---UCCGg -5'
11265 5' -55.9 NC_003059.1 + 5963 0.68 0.126324
Target:  5'- cCCCCAcaagcUGGGGGACcaggugugauaAAGGaCugGaaaaaugagcccuugAGGCCa -3'
miRNA:   3'- -GGGGU-----AUCCCCUG-----------UUCC-GugU---------------UCCGG- -5'
11265 5' -55.9 NC_003059.1 + 5070 0.68 0.139055
Target:  5'- uCCUCuggagaauauuuGGGGACAGcuGGCAUuucuGGGGCCa -3'
miRNA:   3'- -GGGGuau---------CCCCUGUU--CCGUG----UUCCGG- -5'
11265 5' -55.9 NC_003059.1 + 2454 0.7 0.084102
Target:  5'- uCCCCuauGGGGugGucccacuggGGGCACAaguuuugacagggAGGCUg -3'
miRNA:   3'- -GGGGuauCCCCugU---------UCCGUGU-------------UCCGG- -5'
11265 5' -55.9 NC_003059.1 + 2435 1.15 0.000017
Target:  5'- aCCCCAUAGGGGACAAGGCACAAGGCCa -3'
miRNA:   3'- -GGGGUAUCCCCUGUUCCGUGUUCCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.