miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11268 3' -49.9 NC_003059.1 + 4987 1.08 0.000278
Target:  5'- cGGGACAACAGCCAGACAAACCUAAGg -3'
miRNA:   3'- cCCCUGUUGUCGGUCUGUUUGGAUUC- -5'
11268 3' -49.9 NC_003059.1 + 5054 0.74 0.131807
Target:  5'- uGGGGACAGCuggcauuucuggGGCCAGcaAGACCUuAGg -3'
miRNA:   3'- -CCCCUGUUG------------UCGGUCugUUUGGAuUC- -5'
11268 3' -49.9 NC_003059.1 + 6599 0.66 0.435583
Target:  5'- uGGGGAgGACAGUUuaauguuugaguuGGAagccuaacauguuUAGGCCUAAGg -3'
miRNA:   3'- -CCCCUgUUGUCGG-------------UCU-------------GUUUGGAUUC- -5'
11268 3' -49.9 NC_003059.1 + 6452 0.66 0.436747
Target:  5'- gGGGGAacaAACacaggagaccacuGGCCuuGGCAAGCCaGAGa -3'
miRNA:   3'- -CCCCUg--UUG-------------UCGGu-CUGUUUGGaUUC- -5'
11268 3' -49.9 NC_003059.1 + 2442 0.66 0.437913
Target:  5'- aGGGGACAAggcacaaGGCCAGGgAAAaggaguccCCUGGa -3'
miRNA:   3'- -CCCCUGUUg------UCGGUCUgUUU--------GGAUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.