miRNA: 3'- -ACCG--UUCGGU----------CUCUC-GACCUGGGUaa -5'
miRNA: 3'- -ACCGuUCG-GUCUCUCG-------ACCUGGGuaa -5'
miRNA: 3'- -ACCGUUCGGUCUCUCGACCUGGGUAA- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11269 | 3' | -57.3 | NC_003059.1 | + | 604 | 0.68 | 0.082579 |
|
Target: 5'- gUGGCcaAGGCCAuggcccaaguGAGGGuCUGGAUCCGg- -3' miRNA: 3'- -ACCG--UUCGGU----------CUCUC-GACCUGGGUaa -5' |
|||||||
| 11269 | 3' | -57.3 | NC_003059.1 | + | 4671 | 0.67 | 0.103989 |
|
Target: 5'- cUGGUcAGCaCAGAGAGCagaauuaUGGGCCUu-- -3' miRNA: 3'- -ACCGuUCG-GUCUCUCG-------ACCUGGGuaa -5' |
|||||||
| 11269 | 3' | -57.3 | NC_003059.1 | + | 6481 | 1.06 | 0.000041 |
|
Target: 5'- uUGGCAAGCCAGAGAGCUGGACCCAUUa -3' miRNA: 3'- -ACCGUUCGGUCUCUCGACCUGGGUAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home