miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11279 5' -49.4 NC_003083.1 + 91685 0.66 0.993953
Target:  5'- gGCCGCCAAGUugGccaACccgCAUUUAAAa -3'
miRNA:   3'- -CGGUGGUUCGugCc--UGa--GUAAGUUUa -5'
11279 5' -49.4 NC_003083.1 + 103546 0.66 0.993953
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuUUaCAAAUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU--AA-GUUUA- -5'
11279 5' -49.4 NC_003083.1 + 42936 0.66 0.99186
Target:  5'- aGCCACCGAcauuaaCACGGugUCGacgCGAGc -3'
miRNA:   3'- -CGGUGGUUc-----GUGCCugAGUaa-GUUUa -5'
11279 5' -49.4 NC_003083.1 + 88735 0.66 0.99186
Target:  5'- aGUCACCGAGUAUcGACcUCGcuuUUCAAAUa -3'
miRNA:   3'- -CGGUGGUUCGUGcCUG-AGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 74232 0.67 0.98923
Target:  5'- gGCCGCCAAacGCGCGGGagaucgguugCGUUCuuGUg -3'
miRNA:   3'- -CGGUGGUU--CGUGCCUga--------GUAAGuuUA- -5'
11279 5' -49.4 NC_003083.1 + 75592 0.67 0.98923
Target:  5'- aUUGCCAAGCuuGCGGGCUaCAUUCu--- -3'
miRNA:   3'- cGGUGGUUCG--UGCCUGA-GUAAGuuua -5'
11279 5' -49.4 NC_003083.1 + 115415 0.67 0.982032
Target:  5'- gGCCGCCAacGGCGCcacuGGcaGCUCGUUgAAAg -3'
miRNA:   3'- -CGGUGGU--UCGUG----CC--UGAGUAAgUUUa -5'
11279 5' -49.4 NC_003083.1 + 103679 0.69 0.961555
Target:  5'- aGUCACCAAGCAUuGGcCUCGcuuUUUAAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88669 0.7 0.928772
Target:  5'- aGUCACCGAGCAUcGACcUCGcuuUUCAAAUa -3'
miRNA:   3'- -CGGUGGUUCGUGcCUG-AGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 103412 0.7 0.928772
Target:  5'- aGUCACCGAGCAUcGACcUCGcuuUUCAAAUa -3'
miRNA:   3'- -CGGUGGUUCGUGcCUG-AGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88801 0.71 0.904001
Target:  5'- aGUCACCGAGCAUcGAcCUCGcuUUCAAGUa -3'
miRNA:   3'- -CGGUGGUUCGUGcCU-GAGU--AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88537 0.72 0.866985
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCGAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88603 0.72 0.866985
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCGAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 103478 0.72 0.866985
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCGAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88471 0.73 0.841791
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCAAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 103344 0.73 0.841791
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCAAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 88405 0.73 0.841791
Target:  5'- aGUCACCGAGCAUuGGcCUCGcuuUUCAAGUa -3'
miRNA:   3'- -CGGUGGUUCGUG-CCuGAGU---AAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 71715 0.73 0.841791
Target:  5'- uGUgGCCAAGCACGGGCgu-UUUGAAUa -3'
miRNA:   3'- -CGgUGGUUCGUGCCUGaguAAGUUUA- -5'
11279 5' -49.4 NC_003083.1 + 89610 0.77 0.625675
Target:  5'- cGCCGCC-AGCGCGGugUUAgUCAAc- -3'
miRNA:   3'- -CGGUGGuUCGUGCCugAGUaAGUUua -5'
11279 5' -49.4 NC_003083.1 + 6243 1.1 0.007624
Target:  5'- cGCCACCAAGCACGGACUCAUUCAAAUa -3'
miRNA:   3'- -CGGUGGUUCGUGCCUGAGUAAGUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.