miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11280 5' -42.4 NC_003083.1 + 28884 0.66 1
Target:  5'- uGGAUGUugcaacgcgaAAAGCGCGGUaauccacacgGUGGCGUGc -3'
miRNA:   3'- uUUUACA----------UUUUGUGCUA----------CACCGUACu -5'
11280 5' -42.4 NC_003083.1 + 66908 0.66 1
Target:  5'- aAGGAUGUAAAA-ACGAuuucaaauguugUGUGGCGUa- -3'
miRNA:   3'- -UUUUACAUUUUgUGCU------------ACACCGUAcu -5'
11280 5' -42.4 NC_003083.1 + 106692 0.67 0.999996
Target:  5'- cAGGUGUGAguaguccuGACACcAUGUGGCGcaauUGAa -3'
miRNA:   3'- uUUUACAUU--------UUGUGcUACACCGU----ACU- -5'
11280 5' -42.4 NC_003083.1 + 87700 0.68 0.999995
Target:  5'- cGAAGUGgcGGACGCGGacGUGGuCGUGc -3'
miRNA:   3'- -UUUUACauUUUGUGCUa-CACC-GUACu -5'
11280 5' -42.4 NC_003083.1 + 73622 0.68 0.999989
Target:  5'- uAAAAUGUuagAAAGCGCGuuugacgaaGUGGCAUGc -3'
miRNA:   3'- -UUUUACA---UUUUGUGCua-------CACCGUACu -5'
11280 5' -42.4 NC_003083.1 + 9089 0.68 0.999984
Target:  5'- cAAAUGUGccAAGCGCcgcacguuugGGUGUGGCAaaUGAu -3'
miRNA:   3'- uUUUACAU--UUUGUG----------CUACACCGU--ACU- -5'
11280 5' -42.4 NC_003083.1 + 13360 0.7 0.999813
Target:  5'- gAAAcgGgcGAAUGCGAuUGUGGCgAUGAa -3'
miRNA:   3'- -UUUuaCauUUUGUGCU-ACACCG-UACU- -5'
11280 5' -42.4 NC_003083.1 + 34729 0.74 0.995164
Target:  5'- ----gGUGAgcAGCGCGuugauUGUGGCGUGAa -3'
miRNA:   3'- uuuuaCAUU--UUGUGCu----ACACCGUACU- -5'
11280 5' -42.4 NC_003083.1 + 19020 0.86 0.640749
Target:  5'- gAAAAUGUAAAACACG-UGUGGgAUGAu -3'
miRNA:   3'- -UUUUACAUUUUGUGCuACACCgUACU- -5'
11280 5' -42.4 NC_003083.1 + 19133 1.08 0.05052
Target:  5'- aAAAAUGUAAAACACGAUGUGGCAUGAc -3'
miRNA:   3'- -UUUUACAUUUUGUGCUACACCGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.