miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11281 3' -56.6 NC_003083.1 + 108155 0.66 0.807983
Target:  5'- gGGUUGgC-GCGCAUCGUCGcguugaGCGGAUu -3'
miRNA:   3'- gCUAACgGuUGCGUGGCAGC------CGCCUA- -5'
11281 3' -56.6 NC_003083.1 + 51481 0.67 0.798963
Target:  5'- -aAUUGCCAACGCACCGUacaaacGCGu-- -3'
miRNA:   3'- gcUAACGGUUGCGUGGCAgc----CGCcua -5'
11281 3' -56.6 NC_003083.1 + 107692 0.67 0.761426
Target:  5'- ----cGCCAAuCGCACCGgCGGCGa-- -3'
miRNA:   3'- gcuaaCGGUU-GCGUGGCaGCCGCcua -5'
11281 3' -56.6 NC_003083.1 + 43721 0.67 0.761426
Target:  5'- -cGUUGgCAACGCAuugaucCCGUCGGCGa-- -3'
miRNA:   3'- gcUAACgGUUGCGU------GGCAGCCGCcua -5'
11281 3' -56.6 NC_003083.1 + 23115 0.68 0.732004
Target:  5'- ---aUGCCGgcgGCGCGCUGUUGGCGu-- -3'
miRNA:   3'- gcuaACGGU---UGCGUGGCAGCCGCcua -5'
11281 3' -56.6 NC_003083.1 + 112331 0.69 0.639954
Target:  5'- gGGUuuUGCUguAACGCgcgaucgacACCGUCGGUGGAg -3'
miRNA:   3'- gCUA--ACGG--UUGCG---------UGGCAGCCGCCUa -5'
11281 3' -56.6 NC_003083.1 + 24313 0.7 0.598488
Target:  5'- uGAUUGgCGACGCAgcucUCGUCGGCGu-- -3'
miRNA:   3'- gCUAACgGUUGCGU----GGCAGCCGCcua -5'
11281 3' -56.6 NC_003083.1 + 84588 0.71 0.577877
Target:  5'- gCGAcaGCgcaGACGCACgCGUCGGCGGu- -3'
miRNA:   3'- -GCUaaCGg--UUGCGUG-GCAGCCGCCua -5'
11281 3' -56.6 NC_003083.1 + 74268 0.71 0.537184
Target:  5'- uGAacGCCGACGaCGCCG-CGGCGGu- -3'
miRNA:   3'- gCUaaCGGUUGC-GUGGCaGCCGCCua -5'
11281 3' -56.6 NC_003083.1 + 115269 0.75 0.331461
Target:  5'- aCGAgcUGCCaGugGCGCCGUUGGCGGc- -3'
miRNA:   3'- -GCUa-ACGG-UugCGUGGCAGCCGCCua -5'
11281 3' -56.6 NC_003083.1 + 24190 1.06 0.002806
Target:  5'- cCGAUUGCCAACGCACCGUCGGCGGAUg -3'
miRNA:   3'- -GCUAACGGUUGCGUGGCAGCCGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.