miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11281 5' -50.7 NC_003083.1 + 72824 0.66 0.987123
Target:  5'- uCGucgGCGUCGACGG-GUGUa-CGUGCc -3'
miRNA:   3'- -GCua-UGCAGCUGCCgCACAcaGUAUG- -5'
11281 5' -50.7 NC_003083.1 + 71614 0.67 0.985418
Target:  5'- gGAUGCGUUu-UGGUGuUGUgGUCGUACg -3'
miRNA:   3'- gCUAUGCAGcuGCCGC-ACA-CAGUAUG- -5'
11281 5' -50.7 NC_003083.1 + 74274 0.67 0.983546
Target:  5'- cCGAcgACGcCG-CGGCGgUGUGUCAg-- -3'
miRNA:   3'- -GCUa-UGCaGCuGCCGC-ACACAGUaug -5'
11281 5' -50.7 NC_003083.1 + 12076 0.67 0.981497
Target:  5'- gCGAU-CGgUGACaauGGCGUucGUGUCGUGCg -3'
miRNA:   3'- -GCUAuGCaGCUG---CCGCA--CACAGUAUG- -5'
11281 5' -50.7 NC_003083.1 + 116940 0.69 0.945
Target:  5'- uGGUACGcUGugGGUGUGUuGaCGUACa -3'
miRNA:   3'- gCUAUGCaGCugCCGCACA-CaGUAUG- -5'
11281 5' -50.7 NC_003083.1 + 24153 1.11 0.006563
Target:  5'- cCGAUACGUCGACGGCGUGUGUCAUACu -3'
miRNA:   3'- -GCUAUGCAGCUGCCGCACACAGUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.