miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11283 5' -58 NC_003083.1 + 64331 0.66 0.741329
Target:  5'- --aGGCGUUgGCGAaGGUGUuggccauaguguugGCgACGGCg -3'
miRNA:   3'- uuaCCGCAG-CGCUaCCACG--------------CG-UGCCG- -5'
11283 5' -58 NC_003083.1 + 62760 0.66 0.734432
Target:  5'- uAAUGGCGcUCGUGGcccccgGcGUGuCGuCGCGGCg -3'
miRNA:   3'- -UUACCGC-AGCGCUa-----C-CAC-GC-GUGCCG- -5'
11283 5' -58 NC_003083.1 + 38040 0.67 0.714496
Target:  5'- --aGGCGauuacUGCGAaaacguuuugaUGGUGC-CGCGGCa -3'
miRNA:   3'- uuaCCGCa----GCGCU-----------ACCACGcGUGCCG- -5'
11283 5' -58 NC_003083.1 + 59614 0.67 0.684077
Target:  5'- -uUGGCG-CGCGAUGuGgGCGCcguCGGg -3'
miRNA:   3'- uuACCGCaGCGCUAC-CaCGCGu--GCCg -5'
11283 5' -58 NC_003083.1 + 36312 0.68 0.663564
Target:  5'- -cUGcGCGUCGCcauUGGcaGUGCACGGUu -3'
miRNA:   3'- uuAC-CGCAGCGcu-ACCa-CGCGUGCCG- -5'
11283 5' -58 NC_003083.1 + 23259 0.68 0.663564
Target:  5'- uGUGGCG-CGCGuAUaGUGUuuuuauuaacggGCACGGCg -3'
miRNA:   3'- uUACCGCaGCGC-UAcCACG------------CGUGCCG- -5'
11283 5' -58 NC_003083.1 + 38823 0.68 0.632622
Target:  5'- cAAUGGCG-CGCGgcGGacacauuaUGUGCccggGCGGCg -3'
miRNA:   3'- -UUACCGCaGCGCuaCC--------ACGCG----UGCCG- -5'
11283 5' -58 NC_003083.1 + 11904 0.68 0.631589
Target:  5'- --cGGCGUCGuCGcccgacaGUGGUGUGCAauuuaguuuuuuCGGUg -3'
miRNA:   3'- uuaCCGCAGC-GC-------UACCACGCGU------------GCCG- -5'
11283 5' -58 NC_003083.1 + 64535 0.68 0.621264
Target:  5'- --aGGCGUUggcgaagggguugGCGAUGGUgaagGCGUuggcgACGGCg -3'
miRNA:   3'- uuaCCGCAG-------------CGCUACCA----CGCG-----UGCCG- -5'
11283 5' -58 NC_003083.1 + 27056 0.69 0.601675
Target:  5'- ---uGCGUUgGCGGUGuccaaguUGCGCACGGCa -3'
miRNA:   3'- uuacCGCAG-CGCUACc------ACGCGUGCCG- -5'
11283 5' -58 NC_003083.1 + 91138 0.69 0.591395
Target:  5'- -uUGGUGUCGCcAUGuacGgGCGCGGCu -3'
miRNA:   3'- uuACCGCAGCGcUACca-CgCGUGCCG- -5'
11283 5' -58 NC_003083.1 + 109819 0.7 0.554687
Target:  5'- -uUGGCGUUGCGcgaaaagacgccuauAUGGUgagcuGCGUACGcGCg -3'
miRNA:   3'- uuACCGCAGCGC---------------UACCA-----CGCGUGC-CG- -5'
11283 5' -58 NC_003083.1 + 114289 0.7 0.529591
Target:  5'- --aGGCGUcgacCGCGAauauugcUGGUGUG-ACGGCg -3'
miRNA:   3'- uuaCCGCA----GCGCU-------ACCACGCgUGCCG- -5'
11283 5' -58 NC_003083.1 + 64409 0.71 0.481718
Target:  5'- --cGGCGUUgGCGAcGGUGUugGCgACGGCg -3'
miRNA:   3'- uuaCCGCAG-CGCUaCCACG--CG-UGCCG- -5'
11283 5' -58 NC_003083.1 + 20986 0.73 0.382842
Target:  5'- ---aGUGUgCGUaGUGGUGUGCACGGCg -3'
miRNA:   3'- uuacCGCA-GCGcUACCACGCGUGCCG- -5'
11283 5' -58 NC_003083.1 + 43409 1.09 0.001187
Target:  5'- cAAUGGCGUCGCGAUGGUGCGCACGGCa -3'
miRNA:   3'- -UUACCGCAGCGCUACCACGCGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.