miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11284 3' -51.4 NC_003083.1 + 8087 0.66 0.97167
Target:  5'- aGCGCcaaUUaAACGCGuCCGUC-AACGGAa -3'
miRNA:   3'- aCGCG---AGaUUGCGC-GGCAGuUUGUUU- -5'
11284 3' -51.4 NC_003083.1 + 38766 0.66 0.968558
Target:  5'- aGCGCaUUAaucGCGCGuCCGUCGGAUu-- -3'
miRNA:   3'- aCGCGaGAU---UGCGC-GGCAGUUUGuuu -5'
11284 3' -51.4 NC_003083.1 + 74365 0.66 0.965211
Target:  5'- cGCGCgUUUGGCG-GCCG-CGGACAu- -3'
miRNA:   3'- aCGCG-AGAUUGCgCGGCaGUUUGUuu -5'
11284 3' -51.4 NC_003083.1 + 100739 0.66 0.965211
Target:  5'- aUGCGCUagauucguGCGUGCUGUUuuACAAc -3'
miRNA:   3'- -ACGCGAgau-----UGCGCGGCAGuuUGUUu -5'
11284 3' -51.4 NC_003083.1 + 112765 0.67 0.957781
Target:  5'- cGUGCUC-AACGUGCCcagCAcGCGAAa -3'
miRNA:   3'- aCGCGAGaUUGCGCGGca-GUuUGUUU- -5'
11284 3' -51.4 NC_003083.1 + 79992 0.67 0.957781
Target:  5'- uUGCGCggcgauaucccgUCUAauuGCGCGaCCGUCAAucGCGu- -3'
miRNA:   3'- -ACGCG------------AGAU---UGCGC-GGCAGUU--UGUuu -5'
11284 3' -51.4 NC_003083.1 + 98841 0.67 0.953687
Target:  5'- cGCGCUCcaucaauuUAACGCGCaagcaGUUAGAuCAAu -3'
miRNA:   3'- aCGCGAG--------AUUGCGCGg----CAGUUU-GUUu -5'
11284 3' -51.4 NC_003083.1 + 112905 0.67 0.953687
Target:  5'- uUGUGCUgCUAAUGauaaGCCG-CAAACAu- -3'
miRNA:   3'- -ACGCGA-GAUUGCg---CGGCaGUUUGUuu -5'
11284 3' -51.4 NC_003083.1 + 87467 0.67 0.94424
Target:  5'- aGCGCaCgguGCGCGCgaaaaaaagguuuCGUCAAACAAu -3'
miRNA:   3'- aCGCGaGau-UGCGCG-------------GCAGUUUGUUu -5'
11284 3' -51.4 NC_003083.1 + 764 0.67 0.939831
Target:  5'- uUGCGC-CUGACGCGCC-UCuguuCAc- -3'
miRNA:   3'- -ACGCGaGAUUGCGCGGcAGuuu-GUuu -5'
11284 3' -51.4 NC_003083.1 + 62756 0.68 0.934677
Target:  5'- gGCGCUCguggcccccGGCGUGUCGUCGcGGCGGu -3'
miRNA:   3'- aCGCGAGa--------UUGCGCGGCAGU-UUGUUu -5'
11284 3' -51.4 NC_003083.1 + 98930 0.68 0.923554
Target:  5'- uUGCGCguugaggCggcuACGCGCgGUCAAAgCAAAa -3'
miRNA:   3'- -ACGCGa------Gau--UGCGCGgCAGUUU-GUUU- -5'
11284 3' -51.4 NC_003083.1 + 51412 0.69 0.904833
Target:  5'- cGCGCUCguuUAAUGUGCgCGUCAu-CGAAc -3'
miRNA:   3'- aCGCGAG---AUUGCGCG-GCAGUuuGUUU- -5'
11284 3' -51.4 NC_003083.1 + 65425 0.7 0.868366
Target:  5'- aUGgGCcgCcAACGCGCCGcCAAACAu- -3'
miRNA:   3'- -ACgCGa-GaUUGCGCGGCaGUUUGUuu -5'
11284 3' -51.4 NC_003083.1 + 59618 0.7 0.852048
Target:  5'- cGCGCgauguGgGCGCCGUCGGGCu-- -3'
miRNA:   3'- aCGCGagau-UgCGCGGCAGUUUGuuu -5'
11284 3' -51.4 NC_003083.1 + 51445 1.06 0.0074
Target:  5'- uUGCGCUCUAACGCGCCGUCAAACAAAc -3'
miRNA:   3'- -ACGCGAGAUUGCGCGGCAGUUUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.