miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11284 5' -48.6 NC_003083.1 + 14615 0.66 0.998238
Target:  5'- gCGCUacau---UGUGCGUGUUAUCGu -3'
miRNA:   3'- -GCGAgcaaauuACACGCGCAGUAGCu -5'
11284 5' -48.6 NC_003083.1 + 74280 0.66 0.997463
Target:  5'- aCGCcgCGgc-GGUGUGUcaGCGUCAUCa- -3'
miRNA:   3'- -GCGa-GCaaaUUACACG--CGCAGUAGcu -5'
11284 5' -48.6 NC_003083.1 + 10763 0.66 0.996979
Target:  5'- uGUUUuuugUUAAUGUGCGCGUUAU-GAa -3'
miRNA:   3'- gCGAGca--AAUUACACGCGCAGUAgCU- -5'
11284 5' -48.6 NC_003083.1 + 34086 0.67 0.996422
Target:  5'- aCGaCUCGauuacUUGAU-UGCGCGUgCAUCGAa -3'
miRNA:   3'- -GC-GAGCa----AAUUAcACGCGCA-GUAGCU- -5'
11284 5' -48.6 NC_003083.1 + 112660 0.67 0.995783
Target:  5'- aGCgggCGUUgu-UGUuaacaaucGCGCGUUAUCGGu -3'
miRNA:   3'- gCGa--GCAAauuACA--------CGCGCAGUAGCU- -5'
11284 5' -48.6 NC_003083.1 + 42339 0.67 0.994224
Target:  5'- aCGCUCGUgcu-UGgaccaCGCGUCAUCc- -3'
miRNA:   3'- -GCGAGCAaauuACac---GCGCAGUAGcu -5'
11284 5' -48.6 NC_003083.1 + 20037 0.67 0.994224
Target:  5'- gGCUUGUgccaAAUGUGCgGCGUCuguaaGUCGu -3'
miRNA:   3'- gCGAGCAaa--UUACACG-CGCAG-----UAGCu -5'
11284 5' -48.6 NC_003083.1 + 35161 0.67 0.993287
Target:  5'- aCGCUaucaUUGGUGaUGCGCGUCAccUCGu -3'
miRNA:   3'- -GCGAgca-AAUUAC-ACGCGCAGU--AGCu -5'
11284 5' -48.6 NC_003083.1 + 26220 0.68 0.986634
Target:  5'- aGCUCGUcaguuuUUAGUG-GUGCGUCGcUCa- -3'
miRNA:   3'- gCGAGCA------AAUUACaCGCGCAGU-AGcu -5'
11284 5' -48.6 NC_003083.1 + 12092 0.72 0.937174
Target:  5'- gCGUUCGUguc--GUGCGCGUCAUa-- -3'
miRNA:   3'- -GCGAGCAaauuaCACGCGCAGUAgcu -5'
11284 5' -48.6 NC_003083.1 + 62755 0.73 0.890262
Target:  5'- gCGCUCGUggcccccgGCGUGUCGUCGc -3'
miRNA:   3'- -GCGAGCAaauuaca-CGCGCAGUAGCu -5'
11284 5' -48.6 NC_003083.1 + 51411 1.11 0.009915
Target:  5'- gCGCUCGUUUAAUGUGCGCGUCAUCGAa -3'
miRNA:   3'- -GCGAGCAAAUUACACGCGCAGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.