Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11284 | 5' | -48.6 | NC_003083.1 | + | 14615 | 0.66 | 0.998238 |
Target: 5'- gCGCUacau---UGUGCGUGUUAUCGu -3' miRNA: 3'- -GCGAgcaaauuACACGCGCAGUAGCu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 74280 | 0.66 | 0.997463 |
Target: 5'- aCGCcgCGgc-GGUGUGUcaGCGUCAUCa- -3' miRNA: 3'- -GCGa-GCaaaUUACACG--CGCAGUAGcu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 10763 | 0.66 | 0.996979 |
Target: 5'- uGUUUuuugUUAAUGUGCGCGUUAU-GAa -3' miRNA: 3'- gCGAGca--AAUUACACGCGCAGUAgCU- -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 34086 | 0.67 | 0.996422 |
Target: 5'- aCGaCUCGauuacUUGAU-UGCGCGUgCAUCGAa -3' miRNA: 3'- -GC-GAGCa----AAUUAcACGCGCA-GUAGCU- -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 112660 | 0.67 | 0.995783 |
Target: 5'- aGCgggCGUUgu-UGUuaacaaucGCGCGUUAUCGGu -3' miRNA: 3'- gCGa--GCAAauuACA--------CGCGCAGUAGCU- -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 42339 | 0.67 | 0.994224 |
Target: 5'- aCGCUCGUgcu-UGgaccaCGCGUCAUCc- -3' miRNA: 3'- -GCGAGCAaauuACac---GCGCAGUAGcu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 20037 | 0.67 | 0.994224 |
Target: 5'- gGCUUGUgccaAAUGUGCgGCGUCuguaaGUCGu -3' miRNA: 3'- gCGAGCAaa--UUACACG-CGCAG-----UAGCu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 35161 | 0.67 | 0.993287 |
Target: 5'- aCGCUaucaUUGGUGaUGCGCGUCAccUCGu -3' miRNA: 3'- -GCGAgca-AAUUAC-ACGCGCAGU--AGCu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 26220 | 0.68 | 0.986634 |
Target: 5'- aGCUCGUcaguuuUUAGUG-GUGCGUCGcUCa- -3' miRNA: 3'- gCGAGCA------AAUUACaCGCGCAGU-AGcu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 12092 | 0.72 | 0.937174 |
Target: 5'- gCGUUCGUguc--GUGCGCGUCAUa-- -3' miRNA: 3'- -GCGAGCAaauuaCACGCGCAGUAgcu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 62755 | 0.73 | 0.890262 |
Target: 5'- gCGCUCGUggcccccgGCGUGUCGUCGc -3' miRNA: 3'- -GCGAGCAaauuaca-CGCGCAGUAGCu -5' |
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11284 | 5' | -48.6 | NC_003083.1 | + | 51411 | 1.11 | 0.009915 |
Target: 5'- gCGCUCGUUUAAUGUGCGCGUCAUCGAa -3' miRNA: 3'- -GCGAGCAAAUUACACGCGCAGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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