miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11286 3' -50.2 NC_003083.1 + 18333 0.66 0.980918
Target:  5'- --gCGUUgacaacagcGCCGGCGUACaaGCAAGAc -3'
miRNA:   3'- uaaGCAA---------CGGUCGCAUGcgCGUUUUu -5'
11286 3' -50.2 NC_003083.1 + 71115 0.66 0.975934
Target:  5'- -aUUGUUGCCAGU---CGCGCAc--- -3'
miRNA:   3'- uaAGCAACGGUCGcauGCGCGUuuuu -5'
11286 3' -50.2 NC_003083.1 + 87491 0.67 0.970059
Target:  5'- -aUCGUcuaaacguacuUGaCCGGCagcgcacgGUGCGCGCGAAAAa -3'
miRNA:   3'- uaAGCA-----------AC-GGUCG--------CAUGCGCGUUUUU- -5'
11286 3' -50.2 NC_003083.1 + 28318 0.67 0.970059
Target:  5'- ----uUUGCCggaAGCGUgucGCGCGCAAGAc -3'
miRNA:   3'- uaagcAACGG---UCGCA---UGCGCGUUUUu -5'
11286 3' -50.2 NC_003083.1 + 71278 0.68 0.95537
Target:  5'- -aUCGUcaCCAGUGUGCGCGUg---- -3'
miRNA:   3'- uaAGCAacGGUCGCAUGCGCGuuuuu -5'
11286 3' -50.2 NC_003083.1 + 38381 0.68 0.951045
Target:  5'- --aCGUUGCgAGCGU-CGUGUGGAAu -3'
miRNA:   3'- uaaGCAACGgUCGCAuGCGCGUUUUu -5'
11286 3' -50.2 NC_003083.1 + 66551 0.69 0.906464
Target:  5'- cUUCGUgcacGCUAGUGUACaCGCGAAAc -3'
miRNA:   3'- uAAGCAa---CGGUCGCAUGcGCGUUUUu -5'
11286 3' -50.2 NC_003083.1 + 60599 0.74 0.715414
Target:  5'- --cCGUUGCCcGUGUACGCGUAc--- -3'
miRNA:   3'- uaaGCAACGGuCGCAUGCGCGUuuuu -5'
11286 3' -50.2 NC_003083.1 + 42435 0.74 0.693663
Target:  5'- -aUCGUUGCaCAGCGUGCaGCGguGGc- -3'
miRNA:   3'- uaAGCAACG-GUCGCAUG-CGCguUUuu -5'
11286 3' -50.2 NC_003083.1 + 56955 1.04 0.01194
Target:  5'- aAUUCGUUGCCAGCGUACGCGCAAAAAu -3'
miRNA:   3'- -UAAGCAACGGUCGCAUGCGCGUUUUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.