Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11286 | 5' | -56.4 | NC_003083.1 | + | 56917 | 1.15 | 0.000945 |
Target: 5'- cGGCGCCGACACGCUCGGCAAAGACGCa -3' miRNA: 3'- -CCGCGGCUGUGCGAGCCGUUUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 27842 | 0.78 | 0.263288 |
Target: 5'- cGGCGCCGGCcaGCGUgcgUGGUuggGAAGAUGCa -3' miRNA: 3'- -CCGCGGCUG--UGCGa--GCCG---UUUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 28177 | 0.72 | 0.555905 |
Target: 5'- uGCGCgCGACACGCUucCGGCAAAaauUGUg -3' miRNA: 3'- cCGCG-GCUGUGCGA--GCCGUUUcu-GCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 102323 | 0.71 | 0.615973 |
Target: 5'- cGGCGUuggagucugCGACAgGUcgcggcgggaggaUCGGUGAAGGCGCu -3' miRNA: 3'- -CCGCG---------GCUGUgCG-------------AGCCGUUUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 114289 | 0.7 | 0.636506 |
Target: 5'- aGGCGUCGACcgcgaauauUGCUggugugaCGGCGAcGGCGCa -3' miRNA: 3'- -CCGCGGCUGu--------GCGA-------GCCGUUuCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 7808 | 0.69 | 0.688646 |
Target: 5'- uGGCGCa-GCACGUuugUCGGCGguaccgccGGGGCGUu -3' miRNA: 3'- -CCGCGgcUGUGCG---AGCCGU--------UUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 9078 | 0.69 | 0.688646 |
Target: 5'- aGCGCCG-CACGUUUGGgu--GugGCa -3' miRNA: 3'- cCGCGGCuGUGCGAGCCguuuCugCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 73714 | 0.69 | 0.698762 |
Target: 5'- uGGUGCUgcaacaauuGACGCGUUUGGCGc-GACGUu -3' miRNA: 3'- -CCGCGG---------CUGUGCGAGCCGUuuCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 44090 | 0.69 | 0.698762 |
Target: 5'- aGUGCCGcACACGCUuugCGGCGcAG-CGUc -3' miRNA: 3'- cCGCGGC-UGUGCGA---GCCGUuUCuGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 1619 | 0.68 | 0.748314 |
Target: 5'- uGUGCCGcACAUuaUUGGCGccGugGCg -3' miRNA: 3'- cCGCGGC-UGUGcgAGCCGUuuCugCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 84499 | 0.68 | 0.748314 |
Target: 5'- cGCGCCGAUACaGgUUGGCcau-GCGCg -3' miRNA: 3'- cCGCGGCUGUG-CgAGCCGuuucUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 94348 | 0.68 | 0.757953 |
Target: 5'- uGGCGUcaCGACGCGCcCGccaaacacGaCGAAGGCGCc -3' miRNA: 3'- -CCGCG--GCUGUGCGaGC--------C-GUUUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 19854 | 0.68 | 0.764635 |
Target: 5'- uGCGUuuuguauuuuaccaCGACACGUagGGCAAcgacuuacAGACGCc -3' miRNA: 3'- cCGCG--------------GCUGUGCGagCCGUU--------UCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 9326 | 0.68 | 0.767481 |
Target: 5'- aGCGCCGaaacgauugcGCGCGCgacCGGCAAuuGAuUGCa -3' miRNA: 3'- cCGCGGC----------UGUGCGa--GCCGUUu-CU-GCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 106804 | 0.68 | 0.767481 |
Target: 5'- aGGCGCCG-CAgGUUUcuuGUuuGAAGACGCg -3' miRNA: 3'- -CCGCGGCuGUgCGAGc--CG--UUUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 114189 | 0.68 | 0.776887 |
Target: 5'- gGGUGCCGGCAUag--GGUAAacGGGCGCu -3' miRNA: 3'- -CCGCGGCUGUGcgagCCGUU--UCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 81620 | 0.68 | 0.776887 |
Target: 5'- uGCGCUGAuCAUcaGUUUGGCAAGuuauGGCGCu -3' miRNA: 3'- cCGCGGCU-GUG--CGAGCCGUUU----CUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 94191 | 0.67 | 0.804288 |
Target: 5'- gGGCGCCuucguCGUGUUUGGC--GGGCGCg -3' miRNA: 3'- -CCGCGGcu---GUGCGAGCCGuuUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 70763 | 0.67 | 0.821785 |
Target: 5'- cGC-CCGAucaCACGCUUGuGCu-GGACGCc -3' miRNA: 3'- cCGcGGCU---GUGCGAGC-CGuuUCUGCG- -5' |
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11286 | 5' | -56.4 | NC_003083.1 | + | 31989 | 0.67 | 0.830277 |
Target: 5'- aGGCGCaacuauggacuaUGACGCGCcgcauUUGGaacAGACGCg -3' miRNA: 3'- -CCGCG------------GCUGUGCG-----AGCCguuUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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