miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11286 5' -56.4 NC_003083.1 + 19854 0.68 0.764635
Target:  5'- uGCGUuuuguauuuuaccaCGACACGUagGGCAAcgacuuacAGACGCc -3'
miRNA:   3'- cCGCG--------------GCUGUGCGagCCGUU--------UCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 9326 0.68 0.767481
Target:  5'- aGCGCCGaaacgauugcGCGCGCgacCGGCAAuuGAuUGCa -3'
miRNA:   3'- cCGCGGC----------UGUGCGa--GCCGUUu-CU-GCG- -5'
11286 5' -56.4 NC_003083.1 + 106804 0.68 0.767481
Target:  5'- aGGCGCCG-CAgGUUUcuuGUuuGAAGACGCg -3'
miRNA:   3'- -CCGCGGCuGUgCGAGc--CG--UUUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 114189 0.68 0.776887
Target:  5'- gGGUGCCGGCAUag--GGUAAacGGGCGCu -3'
miRNA:   3'- -CCGCGGCUGUGcgagCCGUU--UCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 84894 0.66 0.867641
Target:  5'- cGGCGuuGGgcuuacugcgcaucUACGCggcCGGCGGAGAuuucguuguCGCa -3'
miRNA:   3'- -CCGCggCU--------------GUGCGa--GCCGUUUCU---------GCG- -5'
11286 5' -56.4 NC_003083.1 + 94715 0.66 0.862359
Target:  5'- --gGUCGugGCGCUgCGGCGugucaacugccAAGAUGUa -3'
miRNA:   3'- ccgCGGCugUGCGA-GCCGU-----------UUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 32315 0.66 0.84671
Target:  5'- aGCGCCGGCAgugUGCguuUCGGCca--GCGCc -3'
miRNA:   3'- cCGCGGCUGU---GCG---AGCCGuuucUGCG- -5'
11286 5' -56.4 NC_003083.1 + 14839 0.67 0.838588
Target:  5'- aGGUGuuGGCaaACGCagCGGCAAuGACa- -3'
miRNA:   3'- -CCGCggCUG--UGCGa-GCCGUUuCUGcg -5'
11286 5' -56.4 NC_003083.1 + 94348 0.68 0.757953
Target:  5'- uGGCGUcaCGACGCGCcCGccaaacacGaCGAAGGCGCc -3'
miRNA:   3'- -CCGCG--GCUGUGCGaGC--------C-GUUUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 44090 0.69 0.698762
Target:  5'- aGUGCCGcACACGCUuugCGGCGcAG-CGUc -3'
miRNA:   3'- cCGCGGC-UGUGCGA---GCCGUuUCuGCG- -5'
11286 5' -56.4 NC_003083.1 + 9078 0.69 0.688646
Target:  5'- aGCGCCG-CACGUUUGGgu--GugGCa -3'
miRNA:   3'- cCGCGGCuGUGCGAGCCguuuCugCG- -5'
11286 5' -56.4 NC_003083.1 + 27842 0.78 0.263288
Target:  5'- cGGCGCCGGCcaGCGUgcgUGGUuggGAAGAUGCa -3'
miRNA:   3'- -CCGCGGCUG--UGCGa--GCCG---UUUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 56917 1.15 0.000945
Target:  5'- cGGCGCCGACACGCUCGGCAAAGACGCa -3'
miRNA:   3'- -CCGCGGCUGUGCGAGCCGUUUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 43536 0.66 0.869873
Target:  5'- uGGCGgCGAUaACGauaaCGGCGAAGAaucgUGCa -3'
miRNA:   3'- -CCGCgGCUG-UGCga--GCCGUUUCU----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.