miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11287 5' -54.7 NC_003083.1 + 92002 0.66 0.889335
Target:  5'- cCUGGUaGACGCAauaacgCGAcCGUCGCCGc-- -3'
miRNA:   3'- -GACCG-CUGCGUg-----GUU-GCAGCGGUuuu -5'
11287 5' -54.7 NC_003083.1 + 29451 0.66 0.874824
Target:  5'- uUGGCGuuccgguaAUGCACCAACGaUUGUCGGc- -3'
miRNA:   3'- gACCGC--------UGCGUGGUUGC-AGCGGUUuu -5'
11287 5' -54.7 NC_003083.1 + 55903 0.67 0.851329
Target:  5'- gCUaGCGACGCGCCGGCGUa--CGAGu -3'
miRNA:   3'- -GAcCGCUGCGUGGUUGCAgcgGUUUu -5'
11287 5' -54.7 NC_003083.1 + 9163 0.67 0.851329
Target:  5'- uUGGCuGCGCAguuggaaagaCGGCGUUGCCGGAGc -3'
miRNA:   3'- gACCGcUGCGUg---------GUUGCAGCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 7903 0.67 0.843062
Target:  5'- aUGGCGugccACgGCACCGGCGgUGUCAAAAu -3'
miRNA:   3'- gACCGC----UG-CGUGGUUGCaGCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 47637 0.67 0.83459
Target:  5'- uUGGCGGCgGCugUAaaggcaGCGUacCGCCAAAAu -3'
miRNA:   3'- gACCGCUG-CGugGU------UGCA--GCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 94712 0.68 0.825921
Target:  5'- --cGUGGCGCugCGGCGUgucaacUGCCAAGAu -3'
miRNA:   3'- gacCGCUGCGugGUUGCA------GCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 99069 0.68 0.817062
Target:  5'- uUGGCaACGCGCaagaaGACGUgGUCAAAAc -3'
miRNA:   3'- gACCGcUGCGUGg----UUGCAgCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 1968 0.68 0.817062
Target:  5'- -cGGCGACGCcggcgugcACCGACGaCGgCAGGu -3'
miRNA:   3'- gaCCGCUGCG--------UGGUUGCaGCgGUUUu -5'
11287 5' -54.7 NC_003083.1 + 20948 0.68 0.808024
Target:  5'- -gGGUGGCGUuaACUAACG-CGCCAu-- -3'
miRNA:   3'- gaCCGCUGCG--UGGUUGCaGCGGUuuu -5'
11287 5' -54.7 NC_003083.1 + 36321 0.68 0.808024
Target:  5'- -cGG-GugGCACUGcGCGUCGCCAu-- -3'
miRNA:   3'- gaCCgCugCGUGGU-UGCAGCGGUuuu -5'
11287 5' -54.7 NC_003083.1 + 30630 0.68 0.807111
Target:  5'- gUGGCGucauuauGCGC-CCGAUGUCGUCGu-- -3'
miRNA:   3'- gACCGC-------UGCGuGGUUGCAGCGGUuuu -5'
11287 5' -54.7 NC_003083.1 + 35170 0.68 0.789444
Target:  5'- uUGGUGAUGCGCgucaccuCGUUGCCAAu- -3'
miRNA:   3'- gACCGCUGCGUGguu----GCAGCGGUUuu -5'
11287 5' -54.7 NC_003083.1 + 1831 0.69 0.730381
Target:  5'- -cGGUG-CaCGCCGGCGUCGCCGc-- -3'
miRNA:   3'- gaCCGCuGcGUGGUUGCAGCGGUuuu -5'
11287 5' -54.7 NC_003083.1 + 59568 0.7 0.720159
Target:  5'- gCUGG-GACGCACuCAcCGUUGUCAAAc -3'
miRNA:   3'- -GACCgCUGCGUG-GUuGCAGCGGUUUu -5'
11287 5' -54.7 NC_003083.1 + 23111 0.7 0.720159
Target:  5'- -cGGCGGCGCGCUguuGGCGUuccaCGUCGGGAc -3'
miRNA:   3'- gaCCGCUGCGUGG---UUGCA----GCGGUUUU- -5'
11287 5' -54.7 NC_003083.1 + 24310 0.7 0.720159
Target:  5'- uUGGCGACGCAgCucuCGUCGgCGu-- -3'
miRNA:   3'- gACCGCUGCGUgGuu-GCAGCgGUuuu -5'
11287 5' -54.7 NC_003083.1 + 34298 0.7 0.699482
Target:  5'- aCUGGCGGCGUuuuuCCGACaagCGCUAAu- -3'
miRNA:   3'- -GACCGCUGCGu---GGUUGca-GCGGUUuu -5'
11287 5' -54.7 NC_003083.1 + 114244 0.72 0.562541
Target:  5'- -cGGCGcUGCACCGGCGUCGUg---- -3'
miRNA:   3'- gaCCGCuGCGUGGUUGCAGCGguuuu -5'
11287 5' -54.7 NC_003083.1 + 35306 0.73 0.501206
Target:  5'- -aGGUGACGCGCaucaccaaugaUAGCGUgCGCCAAAAa -3'
miRNA:   3'- gaCCGCUGCGUG-----------GUUGCA-GCGGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.