Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11288 | 3' | -57 | NC_003083.1 | + | 118026 | 0.7 | 0.623116 |
Target: 5'- uGGCGGagGCGgagGCACCUGaugCGGCGUCa -3' miRNA: 3'- uCUGCCg-UGCa--UGUGGGCa--GCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 108463 | 0.69 | 0.683953 |
Target: 5'- cGAUGGCGuguugcUGUGCG-CCGUCGAUagGCCg -3' miRNA: 3'- uCUGCCGU------GCAUGUgGGCAGCUG--CGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 104954 | 0.73 | 0.484522 |
Target: 5'- cGGCGGCGCGUAUguuuaaaUUGUUGugGCCg -3' miRNA: 3'- uCUGCCGUGCAUGug-----GGCAGCugCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 99247 | 0.72 | 0.541618 |
Target: 5'- uGACGGUACGUGggUGCCCGUgGAaaucaaaUGCCc -3' miRNA: 3'- uCUGCCGUGCAU--GUGGGCAgCU-------GCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 88108 | 0.67 | 0.816622 |
Target: 5'- -cGCGGCACc-GCGCCCG-CuGCGCUg -3' miRNA: 3'- ucUGCCGUGcaUGUGGGCaGcUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 87684 | 0.66 | 0.833478 |
Target: 5'- uGGCGGUuaaacACGggcaACaACCCGUCGGcCGCa -3' miRNA: 3'- uCUGCCG-----UGCa---UG-UGGGCAGCU-GCGg -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 82618 | 0.66 | 0.864965 |
Target: 5'- cGGACGGCaaACGUucGCGCagCGUUuGCGUCg -3' miRNA: 3'- -UCUGCCG--UGCA--UGUGg-GCAGcUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 72972 | 1.12 | 0.001318 |
Target: 5'- cAGACGGCACGUACACCCGUCGACGCCg -3' miRNA: 3'- -UCUGCCGUGCAUGUGGGCAGCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 72834 | 0.67 | 0.799105 |
Target: 5'- cGACGGgugUACGUGCcguCUCGgaUCGACGUCu -3' miRNA: 3'- uCUGCC---GUGCAUGu--GGGC--AGCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 72779 | 0.66 | 0.841638 |
Target: 5'- --uCGGUACGUGCgcgGCCUgccagGUCGACGUUu -3' miRNA: 3'- ucuGCCGUGCAUG---UGGG-----CAGCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 67021 | 0.72 | 0.521977 |
Target: 5'- uAGAUGaGCGCGUACAUgggacaaUUGUUGACGCUg -3' miRNA: 3'- -UCUGC-CGUGCAUGUG-------GGCAGCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 65668 | 0.66 | 0.85662 |
Target: 5'- cGACGGCACcggGCACaaaaacaaacgcaCCGUUuuguGCGCCa -3' miRNA: 3'- uCUGCCGUGca-UGUG-------------GGCAGc---UGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 59396 | 0.66 | 0.857389 |
Target: 5'- cGACauGCAUGUGCACaaGUUGACcgguGCCg -3' miRNA: 3'- uCUGc-CGUGCAUGUGggCAGCUG----CGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 59244 | 0.7 | 0.663753 |
Target: 5'- cGACGGCACcggucaacuuGUGCACaugcaUGUCGACGauaCg -3' miRNA: 3'- uCUGCCGUG----------CAUGUGg----GCAGCUGCg--G- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 56920 | 0.67 | 0.825137 |
Target: 5'- uGGCGGCGCcgacACGCUCGgcaaaGACGCa -3' miRNA: 3'- uCUGCCGUGca--UGUGGGCag---CUGCGg -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 51616 | 0.67 | 0.825137 |
Target: 5'- -uACGGUGCGUugGCaauuagCGUC-ACGCCa -3' miRNA: 3'- ucUGCCGUGCAugUGg-----GCAGcUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 51307 | 0.69 | 0.67387 |
Target: 5'- uGACGGCGCGUuagaGCGCaagccgcgUUGUUGGCGCa -3' miRNA: 3'- uCUGCCGUGCA----UGUG--------GGCAGCUGCGg -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 46787 | 0.66 | 0.864965 |
Target: 5'- uAGGCGuuuGCAUGUGCACuCUGUUGGCa-- -3' miRNA: 3'- -UCUGC---CGUGCAUGUG-GGCAGCUGcgg -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 44373 | 0.71 | 0.552526 |
Target: 5'- uGugGGCGCcugcaGUGCGCCCGcacgguuauuugUCGGUGCCa -3' miRNA: 3'- uCugCCGUG-----CAUGUGGGC------------AGCUGCGG- -5' |
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11288 | 3' | -57 | NC_003083.1 | + | 43504 | 0.7 | 0.623116 |
Target: 5'- uGGCGGCACGcgcauauuUGCACUCGUCGuuuugagaGUCa -3' miRNA: 3'- uCUGCCGUGC--------AUGUGGGCAGCug------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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