miRNA: 3'- uCUGCCGUGCAU--GUGGGCAgCU-------GCGG- -5'
miRNA: 3'- -UCUGC-CGUGCAUGUG-------GGCAGCUGCGG- -5'
miRNA: 3'- uCUGCCGUGCAUGug-----GGCAGCugCGG- -5'
miRNA: 3'- -UCUGCCGUgCA-----UGUG-GGCAGCUGCGg -5'
miRNA: 3'- -UCUGCCGUGCAUGUGGGCAGCUGCGG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11288 | 3' | -57 | NC_003083.1 | + | 99247 | 0.72 | 0.541618 |
|
Target: 5'- uGACGGUACGUGggUGCCCGUgGAaaucaaaUGCCc -3' miRNA: 3'- uCUGCCGUGCAU--GUGGGCAgCU-------GCGG- -5' |
|||||||
| 11288 | 3' | -57 | NC_003083.1 | + | 67021 | 0.72 | 0.521977 |
|
Target: 5'- uAGAUGaGCGCGUACAUgggacaaUUGUUGACGCUg -3' miRNA: 3'- -UCUGC-CGUGCAUGUG-------GGCAGCUGCGG- -5' |
|||||||
| 11288 | 3' | -57 | NC_003083.1 | + | 104954 | 0.73 | 0.484522 |
|
Target: 5'- cGGCGGCGCGUAUguuuaaaUUGUUGugGCCg -3' miRNA: 3'- uCUGCCGUGCAUGug-----GGCAGCugCGG- -5' |
|||||||
| 11288 | 3' | -57 | NC_003083.1 | + | 23999 | 0.75 | 0.354501 |
|
Target: 5'- uGGGCGGCGaGUaugacACACgCCGUCGACGUa -3' miRNA: 3'- -UCUGCCGUgCA-----UGUG-GGCAGCUGCGg -5' |
|||||||
| 11288 | 3' | -57 | NC_003083.1 | + | 72972 | 1.12 | 0.001318 |
|
Target: 5'- cAGACGGCACGUACACCCGUCGACGCCg -3' miRNA: 3'- -UCUGCCGUGCAUGUGGGCAGCUGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home